pigx-rnaseq (0.1.1-1) unstable; urgency=medium . * Team upload. . [Andreas Tille] * Standards-Version: 4.6.2 (routine-update) * Build Salsa CI using python3-htseq from experimental . [Steffen Moeller] * Fixed lintian warnings - Improved d/pigx-rnaseq.1 whatis line - Completed path to m4 file . [ Michael R. Crusoe ] * New upstream version. * Remove constraints unnecessary since bullseye (oldstable): + Build-Depends: Drop versioned constraint on r-cran-dt (>= 0.15+dfsg-2) . + pigx-rnaseq: Drop versioned constraint on r-cran-dt (>= 0.15+dfsg-2) in Depends. * d/copyright: no longer need to exclude the m4 directory (it isn't shipped by upstream anymore) * d/upstream/metadata: fix repo URL, add issue tracker pigx-rnaseq (0.1.0-2~0exp0) experimental; urgency=medium . * Team upload. * Experimental rebuild to force testing using bioc-3.19 pigx-rnaseq (0.1.0-1.1) unstable; urgency=medium . * Non-maintainer upload. * Drop citeproc dependency (no longer required). pigx-rnaseq (0.1.0-1) unstable; urgency=medium . * Team upload. * New upstream version * Standards-Version: 4.6.1 (routine-update) * Set upstream metadata fields: Repository-Browse. * Add M4 files from pigx-common * (Build-)Depends: megadepth pigx-rnaseq (0.0.19+ds-1) unstable; urgency=medium . * Team upload. * Drop broken autoconf m4 files from upstream source and use autoconf-archive instead Closes: #1008368 * Drop files that are not included in upstream source from Files-Excluded * Drop transition for old debug package migration. pigx-rnaseq (0.0.19-2) unstable; urgency=medium . * Team Upload. [ Steffen Moeller ] * d/contro pigx-rnaseq binary: Added dependency on r-cran-ggpubr * recommending both rna-star and hisat2 . [ Nilesh Patra ] * d/rules: Export HOME to /tmp to fix FTBFS (Closes: #997320) pigx-rnaseq (0.0.19-1) unstable; urgency=medium . * Team Upload. [ Steffen Moeller ] * New upstream version 0.0.19 * Bumped policy to 4.6.0 * New dependencies - hisat2 - upstream changed default genomic aligner - fastp - fastq file processing - r-cran-gprofiler2 * d/u/metadata: Added ref to SciCrunch RRID:SCR_016476 * overriding dh_fixperms on permissions in /usr/libexec * Added ref to guix . [ Nilesh Patra ] * Remove d/p/salmon_sa.bin2pos.bin.patch: Merged upstream * Pass gunzip and sed paths during configure so it builds reproducible on usrmerge system (Closes: #985144) * Add d/common: The pigx-rnaseq is a submodule needed by this package, But this has no code, and does not look worth it to package. Since its size is very less, it has been added in debian/ dir Changes have also been mentioned in d/copyright * Add B-D on r-cran-ggpubr and r-cran-gprofiler2 pigx-rnaseq (0.0.10+ds-2) unstable; urgency=medium . * Team upload. * debhelper-compat 13 (routine-update) pigx-rnaseq (0.0.10+ds-1) unstable; urgency=medium . * Initial release (Closes: #934041) r-bioc-alabaster.base (1.6.1+ds-2) unstable; urgency=medium . * Upload to unstable. r-bioc-alabaster.base (1.6.1+ds-1) experimental; urgency=medium . * New upstream version r-bioc-alabaster.base (1.6.0+ds-1) experimental; urgency=medium . * New upstream version * dh-update-R to update Build-Depends (routine-update) * Reduce piuparts noise in transitions (routine-update) Trim trailing whitespace. Set upstream metadata fields: Bug-Database, Bug-Submit. * Refreshed the patches * Standards-Version: 4.7.0 (routine-update) Set upstream metadata fields: Repository-Browse. r-bioc-alabaster.base (1.4.2+ds-4) unstable; urgency=medium . * Restrict to little-endian architectures. r-bioc-alabaster.base (1.4.2+ds-3) unstable; urgency=medium . * d/control: loosen r-bioc-alabaster.schemas dependency r-bioc-alabaster.base (1.4.2+ds-2) unstable; urgency=medium . * Upload to unstable. r-bioc-alabaster.base (1.4.2+ds-2~0exp3) experimental; urgency=medium . * d/control: move r-bioc-biocstyle from Depends to Suggests, give r-bioc-alabaster.schemas a minimum version. r-bioc-alabaster.base (1.4.2+ds-2~0exp2) experimental; urgency=medium . * d/{,tests/}control: bump minimum versions of r-bioc-* packages to bioc-3.19+ versions r-bioc-alabaster.base (1.4.2+ds-2~0exp1) experimental; urgency=medium . * Added patch to remove the use of jsonvalidate until r-cran-jsonvalidate is in the archive. * autopkgtests: install additional packages r-bioc-alabaster.base (1.4.2+ds-2~0exp0) experimental; urgency=medium . * d/control: Skip building on 32-bit systems. r-bioc-alabaster.base (1.4.2+ds-1) unstable; urgency=medium . * Initial release (closes: #1076020) r-bioc-alabaster.matrix (1.6.1+ds-2) unstable; urgency=medium . * Upload to unstable. r-bioc-alabaster.matrix (1.6.1+ds-1) experimental; urgency=medium . * New upstream version * Standards-Version: 4.7.0 (routine-update) r-bioc-alabaster.matrix (1.6.0+ds-1) experimental; urgency=medium . * New upstream version * dh-update-R to update Build-Depends (routine-update) Trim trailing whitespace. r-bioc-alabaster.matrix (1.4.2+ds-2) unstable; urgency=medium . * Restrict to little-endian architectures. * Added patch to skip tests that use the 'chihaya' R package which is not yet in Debian. * Trim trailing whitespace. r-bioc-alabaster.matrix (1.4.2+ds-1) unstable; urgency=medium . * Upload to unstable. r-bioc-alabaster.matrix (1.4.2+ds-1~0exp2) experimental; urgency=medium . * d/control: add minimum version number for r-bioc-alabaster.base r-bioc-alabaster.matrix (1.4.2+ds-1~0exp1) experimental; urgency=medium . * d/{,tests/}control: add minimum version number matching bioc-3.19+ r-bioc-alabaster.matrix (1.4.2+ds-1~0exp0) experimental; urgency=medium . * Initial release (Closes: #1076075) * d/control: Skip building on 32-bit systems. r-bioc-alabaster.ranges (1.6.0+ds-2) unstable; urgency=medium . * Upload to unstable. r-bioc-alabaster.ranges (1.6.0+ds-1) experimental; urgency=medium . * New upstream version * Standards-Version: 4.7.0 (routine-update) * dh-update-R to update Build-Depends (routine-update) Trim trailing whitespace. r-bioc-alabaster.ranges (1.4.2+ds-2) unstable; urgency=medium . * Upload to unstable. r-bioc-alabaster.ranges (1.4.2+ds-2~0exp2) experimental; urgency=medium . * d/control: increase minimum version of r-bioc-alabaster.base r-bioc-alabaster.ranges (1.4.2+ds-2~0exp1) experimental; urgency=medium . * d/{,tests/}control: add minimum version numbers matching bioc-3.19+ r-bioc-alabaster.ranges (1.4.2+ds-2~0exp0) experimental; urgency=medium . * autopkgtests: add more dependencies and skip architectures where the dependencies are unavailable r-bioc-alabaster.ranges (1.4.2+ds-1) unstable; urgency=medium . * Initial release (Closes: #1076077) r-bioc-alabaster.sce (1.6.0+ds-2) unstable; urgency=medium . * Upload to unstable. r-bioc-alabaster.sce (1.6.0+ds-1) experimental; urgency=medium . * New upstream version * Standards-Version: 4.7.0 (routine-update) * Reorder sequence of d/control fields by cme (routine-update) Trim trailing whitespace. r-bioc-alabaster.sce (1.4.0+ds-1) unstable; urgency=medium . * Upload to unstable. r-bioc-alabaster.sce (1.4.0+ds-1~0exp1) experimental; urgency=medium . * d/{,tests/}control: add minimum version number matching bioc-3.19+ r-bioc-alabaster.sce (1.4.0+ds-1~0exp0) experimental; urgency=medium . * Initial release (Closes: #1076073) r-bioc-alabaster.se (1.6.0+ds-2) unstable; urgency=medium . * Upload to unstable. r-bioc-alabaster.se (1.6.0+ds-1) experimental; urgency=medium . * New upstream version * Standards-Version: 4.7.0 (routine-update) * dh-update-R to update Build-Depends (routine-update) Trim trailing whitespace. r-bioc-alabaster.se (1.4.1+ds-1) unstable; urgency=medium . * Upload to unstable. r-bioc-alabaster.se (1.4.1+ds-1~0exp2) experimental; urgency=medium . * d/control: increase minimum versions for 2 r-bioc-alabaster.* packages. r-bioc-alabaster.se (1.4.1+ds-1~0exp1) experimental; urgency=medium . * d/{,tests/}control: add minimum version number matching bioc-3.19+ r-bioc-alabaster.se (1.4.1+ds-1~0exp0) experimental; urgency=medium . * Initial release (closes: #1076074) r-bioc-degnorm (1.16.0+ds-2) unstable; urgency=medium . * Team upload. * Upload to unstable. r-bioc-degnorm (1.16.0+ds-1) experimental; urgency=medium . * Team upload. * New upstream version * Standards-Version: 4.7.0 (routine-update) * dh-update-R to update Build-Depends (routine-update) r-bioc-degnorm (1.14.0+ds-1) unstable; urgency=medium . * Team upload. * Upload to unstable. r-bioc-degnorm (1.14.0+ds-1~0exp1) experimental; urgency=medium . * Team upload. * d/control: bump minimum versions of r-bioc-* packages to bioc-3.19+ versions r-bioc-degnorm (1.14.0+ds-1~0exp) experimental; urgency=low . * Team upload. * New upstream version * Set upstream metadata fields: Archive. * d/control: add new build-dep r-bioc-txdbmaker * d/control: Skip building on 32-bit systems. r-bioc-degnorm (1.12.0+ds-1) unstable; urgency=medium . * Team upload. * New upstream version * Add d/t/autopkgtest-pkg-r.conf r-bioc-degnorm (1.10.1+ds-1) unstable; urgency=medium . * Team upload. * New upstream version * dh-update-R to update Build-Depends (routine-update) r-bioc-degnorm (1.8.2+ds-1) unstable; urgency=medium . * Team upload. * New upstream version r-bioc-degnorm (1.8.1+ds-1) unstable; urgency=medium . * Team upload. * New upstream version * Standards-Version: 4.6.2 (routine-update) r-bioc-degnorm (1.8.0+ds-1) unstable; urgency=medium . * Team upload. * New upstream version * Reduce piuparts noise in transitions (routine-update) r-bioc-degnorm (1.6.1+ds-1) unstable; urgency=medium . * Team upload. * New upstream version r-bioc-degnorm (1.6.0+ds-1) unstable; urgency=medium . * Team upload. * New upstream version * Standards-Version: 4.6.1 (routine-update) r-bioc-degnorm (1.4.0+ds-1) unstable; urgency=medium . * Team upload. * New upstream version * dh-update-R to update Build-Depends (routine-update) * Trim trailing whitespace. * Set upstream metadata fields: Bug-Database, Bug-Submit, Repository, Repository-Browse. r-bioc-degnorm (1.2.0+ds-2) unstable; urgency=medium . * Team upload. * Source-only upload r-bioc-degnorm (1.2.0+ds-1) unstable; urgency=medium . * Initial release (closes: #992630) r-bioc-degreport (1.42.0+dfsg-2) unstable; urgency=medium . * Team upload. * Upload to unstable. r-bioc-degreport (1.42.0+dfsg-1) experimental; urgency=medium . * Team upload. * New upstream version * Standards-Version: 4.7.0 (routine-update) r-bioc-degreport (1.40.1+dfsg-1) unstable; urgency=medium . * Team upload. * Upload to unstable. r-bioc-degreport (1.40.1+dfsg-1~0exp) experimental; urgency=medium . * Team upload * New upstream version * d/tests/autopkgtest-pkg-r.conf: skip on 32-bit architectures. r-bioc-degreport (1.38.5+dfsg-1) unstable; urgency=medium . * New upstream version r-bioc-degreport (1.38.3+dfsg-1) unstable; urgency=medium . * New upstream version * dh-update-R to update Build-Depends (routine-update) Set upstream metadata fields: Archive. r-bioc-degreport (1.36.0+dfsg-1) unstable; urgency=medium . * New upstream version * Standards-Version: 4.6.2 (routine-update) r-bioc-degreport (1.34.0+dfsg-1) unstable; urgency=medium . * New upstream version * Reduce piuparts noise in transitions (routine-update) * Set upstream metadata fields: Repository. * lintian-overrides (see lintian bug #1017966) r-bioc-degreport (1.32.0+dfsg-1) unstable; urgency=medium . * New upstream version * Standards-Version: 4.6.1 (routine-update) * Set upstream metadata fields: Repository-Browse. r-bioc-degreport (1.30.3+dfsg-2) unstable; urgency=medium . * Provide autopkgtest-pkg-r.conf to make sure testthat will be found * Drop debian/tests/control and rely on autopkgtest-pkg-r r-bioc-degreport (1.30.3+dfsg-1) unstable; urgency=medium . * New upstream version * Reorder sequence of d/control fields by cme (routine-update) r-bioc-degreport (1.30.0+dfsg-1) unstable; urgency=medium . * Disable reprotest * New upstream version r-bioc-degreport (1.28.0+dfsg-1) unstable; urgency=medium . * New upstream version * Standards-Version: 4.6.0 (routine-update) * dh-update-R to update Build-Depends (3) (routine-update) * No tab in license text (routine-update) r-bioc-degreport (1.26.0+dfsg-1) unstable; urgency=medium . * Team upload. * New upstream version r-bioc-degreport (1.24.1+dfsg-2) unstable; urgency=low . * Trim trailing whitespace. * debian/copyright: use spaces rather than tabs to start continuation lines. * Set upstream metadata fields: Bug-Database, Bug-Submit. r-bioc-degreport (1.24.1+dfsg-1) unstable; urgency=medium . * Initial release (closes: #966349) r-bioc-deseq2 (1.46.0+dfsg-2) unstable; urgency=medium . * Upload to unstable. r-bioc-deseq2 (1.46.0+dfsg-1) experimental; urgency=medium . * New upstream version * Standards-Version: 4.7.0 (routine-update) * Reorder sequence of d/control fields by cme (routine-update) r-bioc-deseq2 (1.44.0+dfsg-1) unstable; urgency=medium . * Upload to unstable. r-bioc-deseq2 (1.44.0+dfsg-1~0exp1) experimental; urgency=medium . * d/{,tests/}control: bump minimum versions of r-bioc-* packages to bioc-3.19+ versions r-bioc-deseq2 (1.44.0+dfsg-1~0exp) experimental; urgency=medium . * New upstream version * d/control: Skip building on 32-bit systems. r-bioc-deseq2 (1.42.1+dfsg-1) unstable; urgency=medium . * New upstream version * Set upstream metadata fields: Archive. * d/control: fix my email address. r-bioc-deseq2 (1.42.0+dfsg-1) unstable; urgency=medium . * New upstream version * dh-update-R to update Build-Depends (routine-update) Set upstream metadata fields: Bug-Database, Bug-Submit, Repository-Browse. r-bioc-deseq2 (1.40.2+dfsg-1) unstable; urgency=medium . * New upstream version * dh-update-R to update Build-Depends (routine-update) r-bioc-deseq2 (1.38.3+dfsg-1) unstable; urgency=medium . * New upstream version r-bioc-deseq2 (1.38.2+dfsg-1) unstable; urgency=medium . * New upstream version * Standards-Version: 4.6.2 (routine-update) r-bioc-deseq2 (1.38.1+dfsg-1) unstable; urgency=medium . * New upstream version * dh-update-R to update Build-Depends (routine-update) * Reduce piuparts noise in transitions (routine-update) r-bioc-deseq2 (1.36.0+dfsg-1) unstable; urgency=medium . * New upstream version * Standards-Version: 4.6.1 (routine-update) r-bioc-deseq2 (1.34.0+dfsg-1) unstable; urgency=medium . * New upstream version * Set field Upstream-Contact in debian/copyright. * Remove obsolete field Contact from debian/upstream/metadata (already present in machine-readable debian/copyright). r-bioc-deseq2 (1.32.0+dfsg-3) unstable; urgency=medium . * Disable reprotest * r-bioc-tximeta is now available for tests r-bioc-deseq2 (1.32.0+dfsg-2) unstable; urgency=medium . [ Nilesh Patra ] * d/t/autopkgtest-pkg-r.conf: Add r-bioc-tximportdata Closes: #994443 r-bioc-deseq2 (1.32.0+dfsg-1) unstable; urgency=medium . [ Andreas Tille ] * Team Upload. * New upstream version * Standards-Version: 4.6.0 (routine-update) * dh-update-R to update Build-Depends (3) (routine-update) * Set upstream metadata fields: Contact. * Remove constraints unnecessary since buster: + Build-Depends: Drop versioned constraint on r-bioc-s4vectors. * Provide autopkgtest-pkg-r.conf to make sure testthat will be found * Drop debian/tests/control and rely on autopkgtest-pkg-r . [ Nilesh Patra ] * d/control: Versioned B-D as per DESCRIPTION file r-bioc-deseq2 (1.30.1+dfsg-1) unstable; urgency=medium . * Team upload. * New upstream version * Refresh patches r-bioc-deseq2 (1.30.0+dfsg-3) unstable; urgency=medium . * r-bioc-glmgampoi is available now - just enable its usage in tests Closes: #976614 * Standards-Version: 4.5.1 (routine-update) * Test-Depends: r-bioc-tximport r-bioc-deseq2 (1.30.0+dfsg-2) unstable; urgency=medium . * Team upload. * debian/patches/fix_autopkgtest.patch: Skip tests based on glmGamPoi r-bioc-deseq2 (1.30.0+dfsg-1) unstable; urgency=medium . * New upstream version * debhelper-compat 13 (routine-update) * Set upstream metadata fields: Bug-Database, Bug-Submit, Repository, Repository-Browse. * Inject checking code that makes autopkgtest fail once r-bioc-glmgampoi is available. Once this is the case the test removal should not be done any more r-bioc-deseq2 (1.28.1+dfsg-1) unstable; urgency=medium . * Team upload. * New upstream version * Add salsa-ci file (routine-update) r-bioc-deseq2 (1.26.0+dfsg-2) unstable; urgency=medium . * Team upload * locfit is in Debian, undoing removal. * d/control: Standards-Version: 4.5.0 * d/control: Rules-Requires-Root: no r-bioc-deseq2 (1.26.0+dfsg-1) unstable; urgency=medium . * Team upload. * New upstream version * Fixed debian/watch for BioConductor * debhelper-compat 12 * Standards-Version: 4.4.1 r-bioc-deseq2 (1.24.0+dfsg-1) unstable; urgency=medium . * New upstream version * debhelper 12 * dh-update-R to update Build-Depends * rename debian/tests/control.autodep8 to debian/tests/control r-bioc-deseq2 (1.22.2+dfsg-1) unstable; urgency=medium . * Team upload. * New upstream version * Standards-Version: 4.3.0 r-bioc-deseq2 (1.22.1+dfsg-2) unstable; urgency=medium . * Team upload. * Fix autopkgtest. r-bioc-deseq2 (1.22.1+dfsg-1) unstable; urgency=medium . * Team upload. . [ Andreas Tille ] * There is no need to force extra Build-Depends since #900974 was closed . [ Dylan Aïssi ] * New upstream version * Standards-Version: 4.2.1 r-bioc-deseq2 (1.20.0+dfsg-1) unstable; urgency=medium . * Rebuild for R 3.5 transition * dh-update-R to update Build-Depends * Remove autogenerated HTML docs since it is including compressed JS r-bioc-deseq2 (1.20.0-2) unstable; urgency=medium . * Fix Maintainer and Vcs-fields * Add comment about really needed Build-Depends not respected by dh-update-R r-bioc-deseq2 (1.20.0-1) unstable; urgency=medium . * New upstream version * dh-update-R to update Build-Depends * Point Vcs fields to salsa.debian.org * Standards-Version: 4.1.4 * dh-update-R to update Build-Depends r-bioc-deseq2 (1.18.1-1) unstable; urgency=medium . * Team upload. * New upstream version. * Fix autopkgtest. * Add ref to registries. * Standards-Version: 4.1.3. * Debhelper 11. r-bioc-deseq2 (1.18.0-1) unstable; urgency=medium . * New upstream version * Secure URI in watch file r-bioc-deseq2 (1.16.1-1) unstable; urgency=medium . * New upstream version * Standards-Version: 4.1.1 * cme fix dpkg-control r-bioc-deseq2 (1.14.1-1) unstable; urgency=medium . * New upstream version * debhelper 10 * d/watch: version=4 r-bioc-deseq2 (1.14.0-1) unstable; urgency=medium . * New upstream version * Add myself to uploaders * Convert to dh-r r-bioc-deseq2 (1.12.4-1) unstable; urgency=medium . * Team upload * New upstream version Closes: #837235 r-bioc-deseq2 (1.12.3-2) unstable; urgency=medium . * Team upload * Fix autopkgtest * Fix Vcs-URL r-bioc-deseq2 (1.12.3-1) unstable; urgency=medium . * Initial release (Closes: #828850) r-bioc-dexseq (1.52.0+dfsg-2) unstable; urgency=medium . * Upload to unstable. r-bioc-dexseq (1.52.0+dfsg-1) experimental; urgency=medium . * New upstream version * Standards-Version: 4.7.0 (routine-update) * Reorder sequence of d/control fields by cme (routine-update) r-bioc-dexseq (1.50.0+dfsg-1) unstable; urgency=medium . * Upload to unstable. r-bioc-dexseq (1.50.0+dfsg-1~0exp1) experimental; urgency=medium . * d/{,tests/}control: bump minimum versions of r-bioc-* packages to bioc-3.19+ versions r-bioc-dexseq (1.50.0+dfsg-1~0exp) experimental; urgency=medium . * New upstream version * d/tests/autopkgtest-pkg-r.conf: skip on 32-bit architectures. r-bioc-dexseq (1.48.0+dfsg-1) unstable; urgency=medium . * Team upload. * New upstream version r-bioc-dexseq (1.46.0+dfsg-1) unstable; urgency=medium . * Team upload. * Provide autopkgtest-pkg-r.conf to make sure testthat will be found * Standards-Version: 4.6.2 (routine-update) * dh-update-R to update Build-Depends (routine-update) * Skip another test requiring pasilla r-bioc-dexseq (1.44.0+dfsg-1) unstable; urgency=medium . * Team upload. * New upstream version * Reduce piuparts noise in transitions (routine-update) r-bioc-dexseq (1.42.0+dfsg-1) unstable; urgency=medium . * Team upload. * New upstream version * Standards-Version: 4.6.1 (routine-update) r-bioc-dexseq (1.40.0+dfsg-1) unstable; urgency=medium . * Team upload. * Disable reprotest * dh-update-R to update Build-Depends (routine-update) r-bioc-dexseq (1.38.0+dfsg-1) unstable; urgency=medium . * Team upload. * New upstream version * Standards-Version: 4.6.0 (routine-update) * dh-update-R to update Build-Depends (3) (routine-update) r-bioc-dexseq (1.36.0+dfsg-1) unstable; urgency=medium . * Team upload. * New upstream version r-bioc-dexseq (1.34.1+dfsg-1) unstable; urgency=medium . * Team upload. * New upstream version r-bioc-dexseq (1.34.0+dfsg-1) unstable; urgency=medium . * Team upload. * New upstream version * debhelper-compat 13 (routine-update) r-bioc-dexseq (1.32.0+dfsg-1) unstable; urgency=medium . * Initial release (closes: #958967) r-bioc-genelendatabase (1.42.0-3) unstable; urgency=medium . * Team upload. * Upload to unstable. r-bioc-genelendatabase (1.42.0-1) experimental; urgency=medium . * Team upload. * New upstream version * Standards-Version: 4.7.0 (routine-update) * dh-update-R to update Build-Depends (routine-update) * d/upstream/metadata: link to their code repo r-bioc-genelendatabase (1.40.1-1) unstable; urgency=medium . * Team upload. * Upload to unstable. r-bioc-genelendatabase (1.40.1-1~0exp1) experimental; urgency=medium . * Team upload. * d/control: bump minimum versions of r-bioc-* packages to bioc-3.19+ versions r-bioc-genelendatabase (1.40.1-1~0exp) experimental; urgency=medium . * Team upload. * New upstream version * Reorder sequence of d/control fields by cme (routine-update) * d/control: add new build-dep on r-bioc-txdbmaker * d/tests/autopkgtest-pkg-r.conf: skip on 32-bit architectures. r-bioc-genelendatabase (1.38.0-1) unstable; urgency=medium . * New upstream version r-bioc-genelendatabase (1.36.0-1) unstable; urgency=medium . * Disable reprotest * New upstream version * Standards-Version: 4.6.2 (routine-update) r-bioc-genelendatabase (1.34.0-1) unstable; urgency=medium . * New upstream version * Reduce piuparts noise in transitions (routine-update) r-bioc-genelendatabase (1.32.0-1) unstable; urgency=medium . * New upstream version * Standards-Version: 4.6.1 (routine-update) r-bioc-genelendatabase (1.30.0-1) unstable; urgency=medium . * New upstream version r-bioc-genelendatabase (1.28.0-1) unstable; urgency=medium . * Team Upload. [ Andreas Tille ] * New upstream version * Standards-Version: 4.6.0 (routine-update) * dh-update-R to update Build-Depends (3) (routine-update) r-bioc-genelendatabase (1.26.0-1) unstable; urgency=medium . * New upstream version * debhelper-compat 13 (routine-update) r-bioc-genelendatabase (1.24.0-1) unstable; urgency=medium . * Team upload. * New upstream version r-bioc-genelendatabase (1.22.0-2) unstable; urgency=medium . * Trim trailing whitespace. r-bioc-genelendatabase (1.22.0-1) unstable; urgency=medium . * Initial release (closes: #954989) r-bioc-goseq (1.58.0-2) unstable; urgency=medium . * Team upload. * Upload to unstable. r-bioc-goseq (1.58.0-1) experimental; urgency=medium . * Team upload. * New upstream version * Standards-Version: 4.7.0 (routine-update) * Reorder sequence of d/control fields by cme (routine-update) Set upstream metadata fields: Bug-Database, Bug-Submit, Repository-Browse. r-bioc-goseq (1.56.0-1) unstable; urgency=medium . * Team upload. * Upload to unstable. r-bioc-goseq (1.56.0-1~0exp1) experimental; urgency=medium . * Team upload. * d/{,tests/}control: bump minimum versions of r-bioc-* packages to bioc-3.19+ versions r-bioc-goseq (1.56.0-1~0exp) experimental; urgency=low . * Team upload * New upstream version * Set upstream metadata fields: Archive. * d/tests/autopkgtest-pkg-r.conf: skip on 32-bit architectures. r-bioc-goseq (1.54.0-1) unstable; urgency=medium . * New upstream version * Add d/t/autopkgtest-pkg-r.conf r-bioc-goseq (1.52.0-1) unstable; urgency=medium . * New upstream version * Standards-Version: 4.6.2 (routine-update) r-bioc-goseq (1.50.0-1) unstable; urgency=medium . * New upstream version * Reduce piuparts noise in transitions (routine-update) r-bioc-goseq (1.48.0-1) unstable; urgency=medium . * New upstream version * Standards-Version: 4.6.1 (routine-update) r-bioc-goseq (1.46.0-1) unstable; urgency=medium . * Disable reprotest * New upstream version r-bioc-goseq (1.44.0-1) unstable; urgency=medium . [ Steffen Moeller ] * Team upload. * New upstream version * Standards-Version: 4.6.0 (routine-update) * Added d/u/metadata . [ Andreas Tille ] * dh-update-R to update Build-Depends (3) (routine-update) r-bioc-goseq (1.42.0-1) unstable; urgency=medium . * New upstream version * debhelper-compat 13 (routine-update) r-bioc-goseq (1.40.0-1) unstable; urgency=medium . * Team upload. * New upstream version * Trim trailing whitespace. r-bioc-goseq (1.38.0-2) unstable; urgency=medium . * Source only upload r-bioc-goseq (1.38.0-1) unstable; urgency=medium . * Initial release (closes: #955138) r-bioc-htsfilter (1.46.0+dfsg-2) unstable; urgency=medium . * Team upload. * Upload to unstable. r-bioc-htsfilter (1.46.0+dfsg-1) experimental; urgency=medium . * Team upload. * New upstream version * Standards-Version: 4.7.0 (routine-update) r-bioc-htsfilter (1.44.0+dfsg-1) unstable; urgency=medium . * Team upload. * Upload to unstable. r-bioc-htsfilter (1.44.0+dfsg-1~0exp) experimental; urgency=medium . * Team upload. * New upstream version * d/tests/autopkgtest-pkg-r.conf: skip on 32-bit architectures. r-bioc-htsfilter (1.42.0+dfsg-1) unstable; urgency=medium . * Team upload. * New upstream version r-bioc-htsfilter (1.40.0+dfsg-1) unstable; urgency=medium . * Team upload. * New upstream version * Standards-Version: 4.6.2 (routine-update) r-bioc-htsfilter (1.38.0+dfsg-2) unstable; urgency=medium . * Team upload. * Disable reprotest * Provide autopkgtest-pkg-r.conf to make sure testthat will be found * Drop debian/tests/control and rely on autopkgtest-pkg-r r-bioc-htsfilter (1.38.0+dfsg-1) unstable; urgency=medium . * Team upload. * New upstream version * Reduce piuparts noise in transitions (routine-update) r-bioc-htsfilter (1.36.0+dfsg-1) unstable; urgency=medium . * Team upload. * New upstream version * Standards-Version: 4.6.1 (routine-update) * Reorder sequence of d/control fields by cme (routine-update) r-bioc-htsfilter (1.34.0+dfsg-1) unstable; urgency=medium . * Team upload. * New upstream version r-bioc-htsfilter (1.32.0+dfsg-1) unstable; urgency=medium . * Team upload. * New upstream version * Fixed debian/watch for BioConductor * Standards-Version: 4.6.0 (routine-update) * dh-update-R to update Build-Depends (3) (routine-update) r-bioc-htsfilter (1.30.1+dfsg-1) unstable; urgency=medium . * Team upload. * New upstream version * Standards-Version: 4.5.1 (routine-update) * Remove autogenerated HTML docs since it is including compressed JS r-bioc-htsfilter (1.30.0-1) unstable; urgency=medium . * Team upload. * New upstream version * debhelper-compat 13 (routine-update) r-bioc-htsfilter (1.28.0-1) unstable; urgency=medium . * Team upload. * New upstream version r-bioc-htsfilter (1.26.0-2) unstable; urgency=medium . * Team upload. * Rules-Requires-Root: no (routine-update) * Trim trailing whitespace. r-bioc-htsfilter (1.26.0-1) unstable; urgency=medium . * Initial release (closes: #958560) r-bioc-isoformswitchanalyzer (2.6.0+ds-2) unstable; urgency=medium . * Team upload. * Upload to unstable. r-bioc-isoformswitchanalyzer (2.6.0+ds-1) experimental; urgency=medium . * Team upload. * New upstream version * Standards-Version: 4.7.0 (routine-update) * dh-update-R to update Build-Depends (routine-update) r-bioc-isoformswitchanalyzer (2.4.0+ds-1) unstable; urgency=medium . * Team upload. * Upload to unstable. r-bioc-isoformswitchanalyzer (2.4.0+ds-1~0exp1) experimental; urgency=medium . * Team upload. * d/control: bump minimum versions of r-bioc-* packages to bioc-3.19+ versions r-bioc-isoformswitchanalyzer (2.4.0+ds-1~0exp) experimental; urgency=low . * Team upload. * New upstream version * Set upstream metadata fields: Archive. * d/control: add new build-dep on r-bioc-pwalign * d/control: Skip building on 32-bit systems. r-bioc-isoformswitchanalyzer (2.2.0+ds-1) unstable; urgency=medium . * Team upload. * New upstream version r-bioc-isoformswitchanalyzer (2.0.1+ds-1) unstable; urgency=medium . * Team upload. * New upstream version * Standards-Version: 4.6.2 (routine-update) * dh-update-R to update Build-Depends (routine-update) * Add autopkgtest-pkg-r.conf r-bioc-isoformswitchanalyzer (1.20.0+ds-1) unstable; urgency=medium . * Team upload. * New upstream version * Standards-Version: 4.6.1 (routine-update) * dh-update-R to update Build-Depends (routine-update) * Reduce piuparts noise in transitions (routine-update) * Set upstream metadata fields: Bug-Database, Bug-Submit, Repository-Browse. r-bioc-isoformswitchanalyzer (1.18.0+ds-1) unstable; urgency=medium . * Team Upload. * New upstream version 1.18.0+ds r-bioc-isoformswitchanalyzer (1.16.0+ds-1) unstable; urgency=medium . * Team upload. * New upstream version 1.16.0+ds * d/control: Run dh-update-R * Add B-D on r-cran-drimseq (Closes: #999632) r-bioc-isoformswitchanalyzer (1.14.0+ds-1) unstable; urgency=medium . * Initial release (closes: #995255) r-bioc-organismdbi (1.48.0+dfsg-2) unstable; urgency=medium . * Team upload. * Upload to unstable. r-bioc-organismdbi (1.48.0+dfsg-1) experimental; urgency=medium . * Team upload. * New upstream version * Standards-Version: 4.7.0 (routine-update) * Reorder sequence of d/control fields by cme (routine-update) r-bioc-organismdbi (1.46.0+dfsg-1) unstable; urgency=medium . * Team upload. * Upload to unstable. r-bioc-organismdbi (1.46.0+dfsg-1~0exp1) experimental; urgency=medium . * Team upload. * d/{,tests/}control: bump minimum versions of r-bioc-* packages to bioc-3.19+ versions r-bioc-organismdbi (1.46.0+dfsg-1~0exp) experimental; urgency=medium . * Team upload. * New upstream version * dh-update-R to update Build-Depends (routine-update) * Set upstream metadata fields: Archive. * d/tests/autopkgtest-pkg-r.conf: skip on 32-bit architectures. r-bioc-organismdbi (1.44.0+dfsg-1) unstable; urgency=medium . * Team upload. * New upstream version r-bioc-organismdbi (1.42.0+dfsg-1) unstable; urgency=medium . * Team upload. * New upstream version * Standards-Version: 4.6.2 (routine-update) * dh-update-R to update Build-Depends (routine-update) * Remove autogenerated HTML docs since it is including compressed JS * Add debian/tests/autopkgtest-pkg-r.conf r-bioc-organismdbi (1.40.0-1) unstable; urgency=medium . * Team upload. * New upstream version * Reduce piuparts noise in transitions (routine-update) r-bioc-organismdbi (1.38.1-1) unstable; urgency=medium . * Team upload. * New upstream version r-bioc-organismdbi (1.38.0-1) unstable; urgency=medium . * Team upload. * New upstream version * Standards-Version: 4.6.1 (routine-update) r-bioc-organismdbi (1.36.0-1) unstable; urgency=medium . * Team upload. * New upstream version * Standards-Version: 4.6.0 (routine-update) * dh-update-R to update Build-Depends (routine-update) * Trim trailing whitespace. r-bioc-organismdbi (1.34.0-2) unstable; urgency=medium . * Team upload. * Avoid running tests since homo.sapiens is not packaged r-bioc-organismdbi (1.34.0-1) unstable; urgency=medium . * Initial release (closes: #991825) r-bioc-rgsepd (1.38.0-2) unstable; urgency=medium . * Team upload. * Upload to unstable. r-bioc-rgsepd (1.38.0-1) experimental; urgency=medium . * Team upload. * New upstream version * Standards-Version: 4.7.0 (routine-update) * dh-update-R to update Build-Depends (routine-update) r-bioc-rgsepd (1.36.0-1) unstable; urgency=medium . * Team upload. * Upload to unstable. r-bioc-rgsepd (1.36.0-1~0exp1) experimental; urgency=medium . * Team upload. * d/{,tests/}control: bump minimum versions of r-bioc-* packages to bioc-3.19+ versions r-bioc-rgsepd (1.36.0-1~0exp) experimental; urgency=medium . * Team uploads * New upstream version * d/tests/autopkgtest-pkg-r.conf: skip on 32-bit architectures. r-bioc-rgsepd (1.34.0-1) unstable; urgency=medium . * New upstream version * Add d/t/autopkgtest-pkg-r.conf r-bioc-rgsepd (1.32.0-1) unstable; urgency=medium . * New upstream version * Standards-Version: 4.6.2 (routine-update) r-bioc-rgsepd (1.30.0-1) unstable; urgency=medium . * New upstream version r-bioc-rgsepd (1.28.0-1) unstable; urgency=medium . * New upstream version * Standards-Version: 4.6.1 (routine-update) r-bioc-rgsepd (1.26.0-1) unstable; urgency=medium . * Team upload. * New upstream version 1.26.0 r-bioc-rgsepd (1.24.0-1) unstable; urgency=medium . * New upstream version * Standards-Version: 4.6.0 (routine-update) * dh-update-R to update Build-Depends (3) (routine-update) r-bioc-rgsepd (1.22.0-1) unstable; urgency=medium . * New upstream version r-bioc-rgsepd (1.20.2-1) unstable; urgency=medium . * Team upload. * New upstream version * debhelper-compat 13 (routine-update) r-bioc-rgsepd (1.20.0-1) unstable; urgency=medium . * Team upload. * New upstream version * Trim trailing whitespace. r-bioc-rgsepd (1.18.0-2) unstable; urgency=medium . * Add missing copyright entry r-bioc-rgsepd (1.18.0-1) unstable; urgency=medium . * Initial release (closes: #955164) r-bioc-scrnaseq (2.20.0+ds-2) unstable; urgency=medium . * Upload to unstable. r-bioc-scrnaseq (2.20.0+ds-1) experimental; urgency=medium . * New upstream version * Standards-Version: 4.7.0 (routine-update) * dh-update-R to update Build-Depends (routine-update) r-bioc-scrnaseq (2.18.0+ds-1) unstable; urgency=medium . * Upload to unstable. r-bioc-scrnaseq (2.18.0+ds-1~1exp0) experimental; urgency=medium . * d/control: fix homepage * Added patch to skip a test related to json valdidation. r-bioc-jsonvalidate is not yet in Debian, and the calls to that library in r-bioc-alabaster.base have been removed. * d/control: depend on the newer r-bioc-hdf5array for a fix related to the other failing tests r-bioc-scrnaseq (2.18.0+ds-1~0exr) experimental; urgency=medium . * d/control: bump up some minimum versions r-bioc-scrnaseq (2.18.0+ds-1~0exq) experimental; urgency=medium . * d/{,tests/}control: add minimum version number matching bioc-3.19+ r-bioc-scrnaseq (2.18.0+ds-1~0exp) experimental; urgency=medium . * New upstream version * dh-update-R to update Build-Depends (routine-update) * Set upstream metadata fields: Archive. * d/tests/autopkgtest-pkg-r.conf: skip on 32-bit architectures. r-bioc-scrnaseq (2.16.0+ds-1) unstable; urgency=medium . * Team upload. * New upstream version r-bioc-scrnaseq (2.14.0+ds-1) unstable; urgency=medium . * Team upload. * New upstream version * Standards-Version: 4.6.2 (routine-update) * Set upstream metadata fields: Bug-Submit. r-bioc-scrnaseq (2.12.0+ds-1) unstable; urgency=medium . * Team upload. * New upstream version * Reduce piuparts noise in transitions (routine-update) r-bioc-scrnaseq (2.10.0+ds-1) unstable; urgency=medium . * Team upload. * New upstream version * Standards-Version: 4.6.1 (routine-update) * Reorder sequence of d/control fields by cme (routine-update) r-bioc-scrnaseq (2.8.0+ds-1) unstable; urgency=medium . * Team upload. * New upstream version r-bioc-scrnaseq (2.6.1+ds-2) unstable; urgency=medium . * extra_depends=r-cran-testthat r-bioc-scrnaseq (2.6.1+ds-1) unstable; urgency=medium . * Team upload. * New upstream version * Standards-Version: 4.6.0 (routine-update) * dh-update-R to update Build-Depends (3) (routine-update) r-bioc-scrnaseq (2.4.0+ds-3) unstable; urgency=high . * skip tests that require flaky downloads r-bioc-scrnaseq (2.4.0+ds-2) unstable; urgency=medium . * Source-only upload. * Drop debian/tests/control: it duplicates the pkg-r-autopkgtests r-bioc-scrnaseq (2.4.0+ds-1) unstable; urgency=medium . * Initial release (closes: #982082) r-bioc-txdbmaker (1.2.1+ds-2) unstable; urgency=medium . * Upload to unstable. r-bioc-txdbmaker (1.2.1+ds-1) experimental; urgency=medium . * New upstream version * Standards-Version: 4.7.0 (routine-update) * dh-update-R to update Build-Depends (routine-update) r-bioc-txdbmaker (1.0.1+ds-1) unstable; urgency=medium . * Upload to unstable. r-bioc-txdbmaker (1.0.1+ds-1~0exp2) experimental; urgency=medium . * d/control: add minimum version for r-bioc-ucsc.utils r-bioc-txdbmaker (1.0.1+ds-1~0exp1) experimental; urgency=medium . * salsa-ci: build/test using experimental. * d/{,tests/}control: bump minimum versions of r-bioc-* packages to bioc-3.19+ versions r-bioc-txdbmaker (1.0.1+ds-1~0exp0) experimental; urgency=medium . * Initial release (closes: #1076066) r-bioc-tximeta (1.24.0+dfsg-2) unstable; urgency=medium . * Upload to unstable. r-bioc-tximeta (1.24.0+dfsg-1) experimental; urgency=medium . * New upstream version * Standards-Version: 4.7.0 (routine-update) * dh-update-R to update Build-Depends (routine-update) r-bioc-tximeta (1.22.1+dfsg-1) unstable; urgency=medium . * Upload to unstable: r-bioc-tximeta (1.22.1+dfsg-1~0exp1) experimental; urgency=medium . * d/{,tests/}control: bump minimum versions of r-bioc-* packages to bioc-3.19+ versions * d/control: add myself as an uploader. Thanks again to Nilesh! r-bioc-tximeta (1.22.1+dfsg-1~0exp) experimental; urgency=medium . [ Andreas Tille ] * Team upload. * Drop Nilesh from Uploaders as requested (Thanks for all your work, Nilesh) * Exclude i386 build from CI test . [ Michael R. Crusoe ] * New upstream version * d/tests/autopkgtest-pkg-r.conf: skip on 32-bit architectures. r-bioc-tximeta (1.20.3+dfsg-1) unstable; urgency=medium . * Team upload. * New upstream version r-bioc-tximeta (1.20.2+dfsg-1) unstable; urgency=medium . * Team upload. * New upstream version r-bioc-tximeta (1.20.1+dfsg-1) unstable; urgency=medium . * Team upload. * New upstream version * Set upstream metadata fields: Archive. r-bioc-tximeta (1.18.3+dfsg-1) unstable; urgency=medium . * Team upload. * New upstream version * Set upstream metadata fields: Bug-Database, Bug-Submit, Repository-Browse. r-bioc-tximeta (1.18.1+dfsg-1) unstable; urgency=medium . * Team upload. * New upstream version r-bioc-tximeta (1.16.1+dfsg-1) unstable; urgency=medium . * Team upload. * New upstream version * Standards-Version: 4.6.2 (routine-update) r-bioc-tximeta (1.16.0+dfsg-1) unstable; urgency=medium . * Team upload. * New upstream version * Reduce piuparts noise in transitions (routine-update) r-bioc-tximeta (1.14.1+dfsg-1) unstable; urgency=medium . * Team upload. * New upstream version * Reorder sequence of d/control fields by cme (routine-update) r-bioc-tximeta (1.14.0+dfsg-2) unstable; urgency=medium . * Team upload. * Skip test which needs a non-existing file r-bioc-tximeta (1.14.0+dfsg-1) unstable; urgency=medium . * Team upload. * New upstream version 1.14.0+dfsg * Bump Standards-Version to 4.6.1 (no changes needed) r-bioc-tximeta (1.12.4+dfsg-2) unstable; urgency=medium . * Team upload. * Provide autopkgtest-pkg-r.conf to make sure testthat will be found * Drop debian/tests/control and rely on autopkgtest-pkg-r r-bioc-tximeta (1.12.4+dfsg-1) unstable; urgency=medium . * Team upload. * New upstream version r-bioc-tximeta (1.12.3+dfsg-1) unstable; urgency=medium . * Team upload. * New upstream version r-bioc-tximeta (1.10.0+dfsg-2) unstable; urgency=medium . * Team upload. * Set upstream metadata fields: Bug-Database, Bug-Submit, Repository, Repository-Browse. r-bioc-tximeta (1.10.0+dfsg-1) unstable; urgency=medium . * Initial release (closes: #994680)