Last updated on 2026-02-12 00:50:24 CET.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 0.2.4 | OK | ||||
| r-devel-linux-x86_64-debian-gcc | 0.2.4 | 3.71 | 452.70 | 456.41 | OK | |
| r-devel-linux-x86_64-fedora-clang | 0.2.4 | 1015.17 | OK | |||
| r-devel-linux-x86_64-fedora-gcc | 0.2.4 | 8.00 | 953.07 | 961.07 | OK | |
| r-devel-macos-arm64 | 0.2.4 | 1.00 | 137.00 | 138.00 | ERROR | |
| r-devel-windows-x86_64 | 0.2.4 | 7.00 | 503.00 | 510.00 | OK | |
| r-patched-linux-x86_64 | 0.2.4 | 4.17 | 615.06 | 619.23 | OK | |
| r-release-linux-x86_64 | 0.2.4 | 3.31 | 613.95 | 617.26 | OK | |
| r-release-macos-arm64 | 0.2.4 | OK | ||||
| r-release-macos-x86_64 | 0.2.4 | 3.00 | 342.00 | 345.00 | OK | |
| r-release-windows-x86_64 | 0.2.4 | 7.00 | 520.00 | 527.00 | OK | |
| r-oldrel-macos-arm64 | 0.2.4 | OK | ||||
| r-oldrel-macos-x86_64 | 0.2.4 | 3.00 | 328.00 | 331.00 | OK | |
| r-oldrel-windows-x86_64 | 0.2.4 | 8.00 | 744.00 | 752.00 | OK |
Version: 0.2.4
Check: tests
Result: ERROR
Running ‘testthat.R’ [1s/1s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
>
> library(testthat)
> library(CohortSymmetry)
>
> test_check("CohortSymmetry")
Saving _problems/test-tableSequenceRatios-4.R
Saving _problems/test-tableTemporalSymmetry-4.R
[ FAIL 2 | WARN 0 | SKIP 62 | PASS 0 ]
══ Skipped tests (62) ══════════════════════════════════════════════════════════
• On CRAN (55): 'test-attrition.R:2:3', 'test-attrition.R:63:3',
'test-attrition.R:149:3', 'test-attrition.R:310:3', 'test-attrition.R:397:3',
'test-attrition.R:461:3', 'test-attrition.R:592:3', 'test-attrition.R:769:3',
'test-dbs.R:2:3', 'test-dbs.R:50:3', 'test-eunomia.R:2:3',
'test-eunomia.R:65:3', 'test-generateSequenceCohortSet.R:3:3',
'test-generateSequenceCohortSet.R:20:3',
'test-generateSequenceCohortSet.R:59:3',
'test-generateSequenceCohortSet.R:99:3',
'test-generateSequenceCohortSet.R:156:3',
'test-generateSequenceCohortSet.R:208:3',
'test-generateSequenceCohortSet.R:262:3',
'test-generateSequenceCohortSet.R:291:3',
'test-generateSequenceCohortSet.R:333:3',
'test-generateSequenceCohortSet.R:359:3',
'test-generateSequenceCohortSet.R:430:3',
'test-generateSequenceCohortSet.R:518:3',
'test-generateSequenceCohortSet.R:666:3',
'test-generateSequenceCohortSet.R:754:3',
'test-generateSequenceCohortSet.R:767:3',
'test-generateSequenceCohortSet.R:779:3',
'test-generateSequenceCohortSet.R:791:3',
'test-generateSequenceCohortSet.R:803:3',
'test-generateSequenceCohortSet.R:821:3',
'test-generateSequenceCohortSet.R:839:3',
'test-generateSequenceCohortSet.R:851:3',
'test-generateSequenceCohortSet.R:862:3',
'test-generateSequenceCohortSet.R:873:3',
'test-generateSequenceCohortSet.R:897:3', 'test-plotSequenceRatio.R:2:3',
'test-plotSequenceRatio.R:42:3', 'test-plotSequenceRatio.R:80:3',
'test-plotTemporalSymmetry.R:43:3', 'test-plotTemporalSymmetry.R:86:3',
'test-summariseSequenceRatios.R:204:3',
'test-summariseSequenceRatios.R:413:3',
'test-summariseSequenceRatios.R:518:3',
'test-summariseSequenceRatios.R:599:3',
'test-summariseSequenceRatios.R:754:3',
'test-summariseSequenceRatios.R:792:3',
'test-summariseSequenceRatios.R:830:3',
'test-summariseSequenceRatios.R:868:3',
'test-summariseTemporalSymmetry.R:71:3',
'test-summariseTemporalSymmetry.R:96:3', 'test-tableSequenceRatios.R:46:3',
'test-tableSequenceRatios.R:70:3', 'test-tableTemporalSymmetry.R:46:3',
'test-tableTemporalSymmetry.R:70:3'
• {omock} is not installed (7): 'test-generateSequenceCohortSet.R:36:3',
'test-generateSequenceCohortSet.R:79:3', 'test-plotTemporalSymmetry.R:2:3',
'test-summariseSequenceRatios.R:2:3', 'test-summariseSequenceRatios.R:68:3',
'test-summariseSequenceRatios.R:135:3',
'test-summariseTemporalSymmetry.R:2:3'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-tableSequenceRatios.R:4:3'): tableSequenceRatios - gt output ───
<rlib_error_package_not_found/rlang_error/error/condition>
Error in `mockCohortSymmetry()`: The package "omock" is required.
Backtrace:
▆
1. └─CohortSymmetry::mockCohortSymmetry() at test-tableSequenceRatios.R:4:3
2. └─rlang::check_installed("omock")
── Error ('test-tableTemporalSymmetry.R:4:3'): tableTemporalSymmetry - gt output ──
<rlib_error_package_not_found/rlang_error/error/condition>
Error in `mockCohortSymmetry()`: The package "omock" is required.
Backtrace:
▆
1. └─CohortSymmetry::mockCohortSymmetry() at test-tableTemporalSymmetry.R:4:3
2. └─rlang::check_installed("omock")
[ FAIL 2 | WARN 0 | SKIP 62 | PASS 0 ]
Error:
! Test failures.
Execution halted
Flavor: r-devel-macos-arm64
Version: 0.2.4
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
--- re-building ‘a01_Introduction.Rmd’ using rmarkdown
Quitting from a01_Introduction.Rmd:41-48 [unnamed-chunk-2]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `library()`:
! there is no package called 'omock'
---
Backtrace:
▆
1. └─base::library(omock)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'a01_Introduction.Rmd' failed with diagnostics:
there is no package called 'omock'
--- failed re-building ‘a01_Introduction.Rmd’
--- re-building ‘a02_Generate_a_sequence_cohort.Rmd’ using rmarkdown
trying URL 'https://cdmconnectordata.blob.core.windows.net/cdmconnector-example-data/GiBleed_5.3.zip'
Content type 'application/zip' length 6754786 bytes (6.4 MB)
==================================================
downloaded 6.4 MB
--- finished re-building ‘a02_Generate_a_sequence_cohort.Rmd’
--- re-building ‘a03_Summarise_sequence_ratios.Rmd’ using rmarkdown
trying URL 'https://cdmconnectordata.blob.core.windows.net/cdmconnector-example-data/GiBleed_5.3.zip'
Content type 'application/zip' length 6754786 bytes (6.4 MB)
==================================================
downloaded 6.4 MB
--- finished re-building ‘a03_Summarise_sequence_ratios.Rmd’
--- re-building ‘a04_Visualise_sequence_ratios.Rmd’ using rmarkdown
trying URL 'https://cdmconnectordata.blob.core.windows.net/cdmconnector-example-data/GiBleed_5.3.zip'
Content type 'application/zip' length 6754786 bytes (6.4 MB)
==================================================
downloaded 6.4 MB
--- finished re-building ‘a04_Visualise_sequence_ratios.Rmd’
--- re-building ‘a05_Summarise_temporal_symmetry.Rmd’ using rmarkdown
trying URL 'https://cdmconnectordata.blob.core.windows.net/cdmconnector-example-data/GiBleed_5.3.zip'
Content type 'application/zip' length 6754786 bytes (6.4 MB)
==================================================
downloaded 6.4 MB
--- finished re-building ‘a05_Summarise_temporal_symmetry.Rmd’
--- re-building ‘a06_Visualise_temporal_symmetry.Rmd’ using rmarkdown
trying URL 'https://cdmconnectordata.blob.core.windows.net/cdmconnector-example-data/GiBleed_5.3.zip'
Content type 'application/zip' length 6754786 bytes (6.4 MB)
==================================================
downloaded 6.4 MB
--- finished re-building ‘a06_Visualise_temporal_symmetry.Rmd’
SUMMARY: processing the following file failed:
‘a01_Introduction.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavor: r-devel-macos-arm64