f810e74c08ab17d9ba8cedb087499809 *DESCRIPTION
b9ec0625922afe1eb630451c12539ea6 *LICENSE
ac14c245a78b8516f302c9aeb2c151f2 *NAMESPACE
5dc80139cc2ca9be6d9dbb333e75b7e5 *NEWS.md
23c1acb62f261d1472fc2f1e43a69a3f *R/cat_cox.R
e5e7e7765b90e2b6fbeba734d2996bc3 *R/cat_cox_bayes.R
bbfaa4ae6f5e61b3d95ede4fc3bead27 *R/cat_cox_bayes_joint.R
60ab408dda642b3b2b8fbca7a1ef369f *R/cat_cox_initialization.R
5d2e58c69b7bcc061d311342be3195af *R/cat_cox_tune.R
bb566ed420422f8bbd3f276ad2b44c7d *R/cat_glm.R
22967414e75dfc00d50352075df4af4e *R/cat_glm_bayes.R
1f82bfd9bf01b6318593075c7495509b *R/cat_glm_bayes_joint.R
b21c540e02603ee6277accd23515f980 *R/cat_glm_bayes_joint_gibbs.R
41872f28e050755835901bfe8d2f2918 *R/cat_glm_initialization.R
04ebe7b6c83420a7d3a9fca6674dc9c3 *R/cat_glm_tune.R
9e84834332e2ef31b984ff9a0c3b7e6c *R/cat_lmm.R
859a0d859add630d04705d25a7ecdf43 *R/cat_lmm_initialization.R
dc4e683011023795e6a485bdad439d01 *R/cat_lmm_tune.R
df52f233ef798410f027759778cacd0f *R/data.R
0ec59d81d0c5445d32d1737eeece8df2 *R/misc.R
c3dd9abb946ae712ab63b6b87491fa36 *R/plots.R
edaad6d617c730f2649389ba40162b36 *R/predict.R
194b1269d32cb64b7c11b053bb97f4a6 *R/prints.R
d962f668f2c41d21a443edefd2a1ddc4 *README.md
122dbd23d8d3659ff3205444f6ee6c98 *build/vignette.rds
40fce7710ae3fc7a4337a39d1b602800 *data/swim.rda
9caf4e2a7fd903127e4f71f66e132fd0 *inst/CITATION
a4eb973eafa5fdf80d71b98282e05774 *inst/README_files/figure-markdown_strict/unnamed-chunk-4-1.png
7982cd8f7196d8f3ed859e4c27dd81ad *inst/README_files/figure-markdown_strict/unnamed-chunk-5-1.png
b9745c2a7d902aed19838f0110821cf5 *inst/README_files/figure-markdown_strict/unnamed-chunk-6-1.png
fc5a72722658f81527cda231cc8e6b98 *inst/doc/catalytic_cox.R
44e286a57523eae4d48f1c468477cf80 *inst/doc/catalytic_cox.Rmd
11c2029c16245ee32fcc5bf8155c8e2e *inst/doc/catalytic_cox.html
659b531f32013357e93f3ae5ccff326d *inst/doc/catalytic_glm_binomial.R
da97973fd914358a95714dc5b4627597 *inst/doc/catalytic_glm_binomial.Rmd
894565adeda6786d855c15cfa9348967 *inst/doc/catalytic_glm_binomial.html
55292036eac62dda23ae5a90f4a10baf *inst/doc/catalytic_glm_gaussian.R
11c0031f11ec5467ad2e3e79608823ed *inst/doc/catalytic_glm_gaussian.Rmd
8ff59ede650265f43d6a3dc15f6ec707 *inst/doc/catalytic_glm_gaussian.html
358f5180700610534a5c6f8569fb30d7 *inst/stan/cox.stan
8cf2ae3bbf2d125483680ab53867976c *inst/stan/cox_joint.stan
cf7e6a5beb44da5ea86a27cf2dd6fcbd *inst/stan/glm_binomial.stan
f676a47a1296f7bd6ee4dd4e2cdb6608 *inst/stan/glm_binomial_joint.stan
9bee12b10c25edf1acd9dcb858af10d3 *inst/stan/glm_binomial_joint_theta.stan
dd37e4ad22d345f9b386bbfb6b1a9874 *inst/stan/glm_binomial_joint_theta_alpha.stan
efcc912a22b6c91c12c2d7b3303a190c *inst/stan/glm_gaussian.stan
f95ef379a38a2cc85163773e433afaf9 *inst/stan/glm_gaussian_joint.stan
a890e62173ac6632c36bbae046616d86 *inst/stan/glm_gaussian_joint_known_variance.stan
583c43b0db6bfd3343d7872673f6f646 *inst/stan/glm_gaussian_known_variance.stan
be8bf0db1c70384298d5d6387e15b96d *man/cat_cox.Rd
eb7d85d264fc81c9d1f6961eead4016d *man/cat_cox_bayes.Rd
3779c658d00ea4c7cc6cc8db052cdb94 *man/cat_cox_bayes_joint.Rd
708b340d9ab8f27acfff414a0be3b175 *man/cat_cox_initialization.Rd
18982e38cd386e67c139457b37b97f5f *man/cat_cox_tune.Rd
66d542e1a9f2e166e794644599378117 *man/cat_glm.Rd
a945073c0429d88261ab0fc1cefda510 *man/cat_glm_bayes.Rd
b1244a5098d632e3592e4e0d43bf0c66 *man/cat_glm_bayes_joint.Rd
b7866150e21affdeb66313581e7917f6 *man/cat_glm_bayes_joint_gibbs.Rd
efbba14b18685df70db800e59af9d750 *man/cat_glm_initialization.Rd
0b30bc0edb1be21c90d5a98bc9dda153 *man/cat_glm_tune.Rd
b793446bd624b256bcccd3d25ccaa2e3 *man/cat_lmm.Rd
5d50959616da62476b49bf9e00b77a01 *man/cat_lmm_initialization.Rd
63c0a2020fe7bd0a6cf55e64af31b014 *man/cat_lmm_tune.Rd
aad6d344b5b568690c6ea541db70c703 *man/cross_validation.Rd
ae92c4fd0f285934d85baec9e0ad47b8 *man/cross_validation_cox.Rd
0ac3f60870acd69e651456af0aa84eba *man/cross_validation_lmm.Rd
fb5f3177f06643a3791dfa9cbadbe954 *man/extract_coefs.Rd
f25cf7253a6cf2aad7770b06afdd13a7 *man/extract_dim.Rd
f768b9937f7483f94f76227272e1304b *man/extract_stan_summary.Rd
124f079905226a55ee38f517365a9cbb *man/extract_tau_seq.Rd
32cb276b6dcaf4f2afe9e06868a42cfa *man/figures/README-pressure-1.png
23f4411625c4867e1b4c3adbedc7dad9 *man/get_adjusted_cat_init.Rd
b51f1b4738da75cb413234725874f764 *man/get_cox_gradient.Rd
2570d28140e1c282f4ebd113a2acf3b6 *man/get_cox_hessian.Rd
7d0985f05029d8abfe224de2ab08b872 *man/get_cox_kappa.Rd
7ae8204b58b80dfbf29332cedda789ee *man/get_cox_partial_likelihood.Rd
e43878609e2857a03b29a7bbc727c827 *man/get_cox_qr_solve.Rd
a6df22363c2d0a40467d36bf4f6f7ba5 *man/get_cox_risk_and_failure_sets.Rd
174595ffff272f14fe08593e3c2e2677 *man/get_cox_risk_set_idx.Rd
73e5e35ca975269cd107ad3f20b3aaa3 *man/get_cox_syn_gradient.Rd
8f06aae1c56d5f21ca564e00f84a307c *man/get_cox_syn_hessian.Rd
82a2056089406dc9bf72d6a9d7074c77 *man/get_discrepancy.Rd
0dd70c5368f954df636e84b9e71a616f *man/get_formula_lhs.Rd
5ffcc1b07278899627ba1830292c738d *man/get_formula_rhs.Rd
f0e14903cd2f95eb2fc10ebdaf6628a2 *man/get_formula_string.Rd
405861fc013a4637f525b5589835b3f4 *man/get_glm_custom_var.Rd
59da4d1a676f6e95043ca205cad9286c *man/get_glm_diag_approx_cov.Rd
9d33f41c030fd4d94ff1638d040890d7 *man/get_glm_family_string.Rd
f458078579be442628cc3c9d01274763 *man/get_glm_lambda.Rd
69638350fe48d8a296b1c6ca1a1f9b76 *man/get_glm_log_density.Rd
3ca7e13dc4469275b8840d777a45ffd3 *man/get_glm_log_density_grad.Rd
84fbaf90851b6ca060f0d30173a3ffc1 *man/get_glm_mean.Rd
c82a99313a9fd2eddfbcb591a876d683 *man/get_glm_sample_data.Rd
2ea9fd31a7e51e45781e340c62233002 *man/get_hmc_mcmc_result.Rd
0fe7b6361def6b9d5c5ec5fdd1cc4866 *man/get_linear_predictor.Rd
7d036017839da8861b8f4333166ca339 *man/get_resampled_df.Rd
9614a4a39678ede44b621f610cc3809b *man/get_stan_model.Rd
fff3ce5d0c11935cd41b6757c777bf1e *man/get_standardized_data.Rd
35f8950ad8c6daddaf8fe530cc6783b8 *man/hmc_neal_2010.Rd
b6f977cf4473bfeac07c4ac0ffeadcfd *man/is.continuous.Rd
85ea1831a9b3d4632e03e1674cc08799 *man/mallowian_estimate.Rd
f4a47503361ad62cea3d78c8fcdca40e *man/parametric_bootstrap.Rd
68a2dbd258a5ba904d10d12057afba27 *man/plot.cat_tune.Rd
4df31a42365ba8ede4751b10e7826c46 *man/predict.cat_cox.Rd
14edf10cb1fdc5818fbb971413b47ed6 *man/predict.cat_glm.Rd
5a3574640df86409a8135b516fab67b0 *man/predict.cat_lmm.Rd
f2afcaab159e6cd4e19f6f7b4bc16154 *man/print.cat.Rd
afaaf2894041ad98fd074408a4ccedcf *man/print.cat_bayes.Rd
8c9343f055e151546f542d95cf211d71 *man/print.cat_gibbs.Rd
e26c9af26477082e46cda441d48d228c *man/print.cat_initialization.Rd
ad3e4ed2a2221e62fe297368f06733ad *man/print.cat_tune.Rd
e599260ed142a0641a349a77f32e8426 *man/print_df_head_tail.Rd
f8af9ad606f077106f22dbba95a65d69 *man/print_glm_bayes_joint_binomial_suggestion.Rd
1401188807072a16567d8fd4a37e23fb *man/steinian_estimate.Rd
4e88cb985b5cc816a906154c431d6bea *man/swim.Rd
86e06bda7acb34f6f8189eb8afd53769 *man/traceplot.Rd
c4b0ade1367fe8a6a191abbfac70c19b *man/traceplot.cat_bayes.Rd
1b01f6d53b1365ab93687d77ec968c7e *man/traceplot.cat_gibbs.Rd
8646ef7adf73c1dba4c2a5c019c1d1fb *man/update_lmm_variance.Rd
a1e5501f070a7b71e54124fa37475001 *man/validate_cox_initialization_input.Rd
9032d4455fe4a11d9e5c6d4c5afaf7bc *man/validate_cox_input.Rd
158abb8bea5b4ecf00a34b4d97dc57ca *man/validate_glm_initialization_input.Rd
4be71c249b60125c6a071f340c87d7da *man/validate_glm_input.Rd
f7cbcfdee13b7c5176e9612295ca77d8 *man/validate_lmm_initialization_input.Rd
a4163016b46255ae31ab59c05b567b55 *man/validate_lmm_input.Rd
832c8f388a843a677328166901cfe162 *man/validate_positive.Rd
f6878304a87d8958d0655c5c34c5ddab *tests/testthat.R
570c8f7231bb4d9df83e0a2d21f6fe63 *tests/testthat/helper.R
ed50d96c23b3193e34425b342eb0b571 *tests/testthat/test-cat_cox.R
c9121dc173413919783348fb34550582 *tests/testthat/test-cat_cox_bayes.R
c570865619e214fdd0c552086c2b209f *tests/testthat/test-cat_cox_bayes_joint.R
a82fb27053803152f9991178e4cb0eb9 *tests/testthat/test-cat_cox_initialization.R
97fbf2d14970d959aebd64282124d472 *tests/testthat/test-cat_cox_tune.R
2c20e14b403ee00acc5abc0cccf33230 *tests/testthat/test-cat_glm.R
bff9fd4833af01a6ab3cc231027e43f0 *tests/testthat/test-cat_glm_bayes.R
a664e22860276a18f5fba1f2f6f96bc8 *tests/testthat/test-cat_glm_bayes_joint.R
4f529a82b6d898fb8774e43914e82fe0 *tests/testthat/test-cat_glm_bayes_joint_gibbs.R
5274246f56b89c5a52bb46c9de083e72 *tests/testthat/test-cat_glm_initialization.R
db8817f0d29b4afb2e216f2b92cf6176 *tests/testthat/test-cat_glm_tune.R
5f0d3c794a2751ed64b3b3e3a23cf3d5 *tests/testthat/test-cat_lmm.R
729c10d41932681ff63594447a72d4b4 *tests/testthat/test-cat_lmm_initialization.R
55f0bcd34c2b1520c382b31ec4a090bf *tests/testthat/test-cat_lmm_tune.R
c49ddef5111cf663d083b5037bb7dec4 *tests/testthat/test-misc.R
17437262edf7345c5997115f1571bd32 *tests/testthat/test-predict.R
79da06317b7f3b4972bd890d01b24620 *vignettes/assets/catalytic_refs.bib
44e286a57523eae4d48f1c468477cf80 *vignettes/catalytic_cox.Rmd
da97973fd914358a95714dc5b4627597 *vignettes/catalytic_glm_binomial.Rmd
11c0031f11ec5467ad2e3e79608823ed *vignettes/catalytic_glm_gaussian.Rmd
