1b4c2afc7f6162b7449fcc9775dc2ad0 *DESCRIPTION
754ef6dec33aba1bc272a0eca41a0d36 *NAMESPACE
d836afcc0d298a8ebe751668b8ab5553 *NEWS
e110cc4ff99773e9b467283c8a3dcc2c *R/A.R
2c8e09a3fbcf788d7f54372786b886fb *R/A_ExonPtnAlign_functions.R
e09bec2c2853a4e09f19d3e9f3f42f04 *R/A_support_functions.R
10147698498ec4d2c13545f3e42f9ac3 *R/A_wrapper.R
a2975d74b37fc49b28a26b0e0930cba1 *R/BIGDAWG.R
19f51a0da94753d1ec06038371900563 *R/DRB_Parser.R
ca9ca088e9b109133dfc807bd9a7660c *R/ErrLog.R
5915f6bd1b7a55231b24d9eb2261db2d *R/GL2TAB.R
4eea99c88d9fc754be6a3464170c8174 *R/GLSconvert.R
eba3d557b7d586cb7d461302748f03fd *R/HWE.R
2cfb4781d68d9abffbd1a24984aeb9b4 *R/HWE_support_functions.R
1ad403801d3edc31c41714160146ee9c *R/HWE_wrapper.R
9d121e72b3853e8e459773113dfd2efc *R/H_MC.R
cc4d8268df0b98c2773417a5a0a3e99a *R/H_support_functions.R
2e91a967a9cb638ff631924c3c616c74 *R/H_wrapper_MC.R
db5df25ab10918fbc382e5c13aab9b59 *R/L.R
18bba95cac9d766ebadb7e2520dde55c *R/L_wrapper.R
0779b9bfe369c4d8926b10d0e7f8db71 *R/TAB2GL.R
b925ed5f84a1fc02787f6bdb98c9bca7 *R/check_functions.R
e90be909311eb80319d13cb93d3f22ab *R/data.R
c91a0fe0e7e6b8962d761b1790bb2690 *R/general_functions.R
062bfad3437b5909dcb2444983d9bbdf *R/stat_functions.R
f82c70a358224f936bc7af77c0e29623 *R/sysdata.rda
5c784266a33d01e7128b1c1be96b9e16 *R/update_wrapper.R
e2081b614ec1ec8fed6241074346bb92 *build/vignette.rds
72a4bf4a385ef918ace6f0d8d7a503ed *inst/doc/BIGDAWG.Rmd
c4fce99541be46a225038f22f9e5440f *inst/doc/BIGDAWG.html
c70a494904aac457fc9ea2bc4a434e7e *inst/doc/GLSconvert.Rmd
0d98d1dbca475ada47ae05eb3dd494b0 *inst/doc/GLSconvert.html
29af8fe82d2f46c7a73b9ef13fc8d4cd *man/A.Rd
0edc858fb1c54c95bc65e2fc7cc8db56 *man/A.wrapper.Rd
b807f615ba80bc91a794676c55594ea8 *man/AA.df.check.Rd
d12a08c11fafcf256c55d30f25b06eb6 *man/AA.df.cs.Rd
71cdf377808494135460e896816ba113 *man/AAtable.builder.Rd
d5fbb6427ceafc3a5d99645b773a85cf *man/AlignObj.Create.Rd
e8f6d5aa95890d36bc7afb2b094d184e *man/AlignObj.Update.Rd
89f0d0c505eee9d218e094e3b52f282a *man/AlignmentFilter.Rd
04e009a4ebd449f3035d3a3256c93a4d *man/Append.System.Rd
b40c8c91cd4e0b769d1a81a52e49275f *man/BIGDAWG.Rd
1761f3d34507cbe4c35dc2bf26af1af9 *man/Build.Matrix.Rd
5e9cd70877c9f8ba8e040181c0cdff67 *man/Check.Cores.Rd
c35ee6c00a9564695152f544bcfe1e28 *man/Check.Data.Rd
183ef6b855f7ce6d8f1406c1b0a956c3 *man/Check.Params.GLS.Rd
d8ec681bb701a76d99598528afff1d80 *man/Check.Params.Rd
929f17d045d6141383261b4b266c6b36 *man/CheckAlleles.Rd
dd1fce0922970dff633abc623a5633ed *man/CheckHLA.Rd
74efce813a42418a6b7b9c5ece482f78 *man/CheckLoci.Rd
6b9b22e089105b4115f28f29ef9d515c *man/CheckRelease.Rd
b59a925b13580b5a97bc0cff47939c4c *man/CheckString.Allele.Rd
90977caa6dac64575804b7bde30b35e1 *man/CheckString.Locus.Rd
bf8653d899150dd9581a199785c973a2 *man/Condense.EPL.Rd
67f4272e95cb54809a7f859ad6597790 *man/Create.Null.Table.Rd
42cc75a5a2ed2c276c5a6afa10ecf32c *man/DRB345.Check.Wrapper.Rd
032adc686955076823f2d99cb7e21415 *man/DRB345.Check.Zygosity.Rd
f5017899841a83dfd29b07751ca5ec92 *man/DRB345.Exp.Rd
2f7bc18586526fc8e286a0e303ff3d47 *man/DRB345.parser.Rd
b259677de6efd567e98ae8fb3ca9618b *man/EVSremoval.Rd
f5fdde885c7ae1b1a458821716671020 *man/Err.Log.Rd
3b04ba809d36869f348f1de9c5921b0a *man/Exon.Filter.Rd
cf662a09e1f388c9f64287dd463eb1ca *man/ExonPtnAlign.Create.Rd
5b8b7279f0a9f8f495e3297cc05c2f14 *man/ExonPtnList.Rd
18b7609d2b1333822d21202d3636694f *man/Filler.Rd
b2f3811d7c20e8832011954f242aef76 *man/Format.Allele.Rd
522ebbf6f6ab1c125cee0c159ede5d85 *man/Format.Tab.Rd
6c472d7838d911dff7cfcabcc139fe40 *man/GL2Tab.Loci.Rd
5be6d93a3df270a691119903ed9227ae *man/GL2Tab.Sub.Rd
6bff731aea169b2e66539cf2a0f40ac0 *man/GL2Tab.wrapper.Rd
a4908f47216d8e2d415ede9c3dc6c680 *man/GLSconvert.Rd
70ca384414e7485225df2a7bec3b1e63 *man/GetField.Rd
7796329565d423cb31c954f0d2018cb4 *man/GetFiles.Rd
2984fd14158877e80e2a0c94976c0090 *man/H.MC.Rd
3c56dba2105fae3a4d428cf3d20e89fc *man/H.MC.wrapper.Rd
58e1c98a2ba2bdff9d33194a5b3776f2 *man/HLA_data.Rd
50aff812db18dcbbde972e8bb32a11c6 *man/HWE.ChiSq.Rd
82b0ffb6ff5c964ecf3af74efa88d08a *man/HWE.Rd
0355ead29058df496ad0a8eefa4e2971 *man/HWE.wrapper.Rd
deadb19807c334a95693773296eb6791 *man/L.Rd
3bc5bb48a028b0270b5b676627229adf *man/L.wrapper.Rd
1c009566b60df65b1fc3855f7d31af48 *man/MergeData_Output.Rd
b3de995ed5a2c5046983b6f069bc58a0 *man/PgrpExtract.Rd
3062dba20b0da413697af412a59f89b5 *man/PgrpFormat.Rd
a7459b6d11e2078023e125d6d2beaffa *man/PreCheck.Rd
38bbddf583e9f65d64be780f5ec8c517 *man/RunChiSq.Rd
a011464d6c8e8300a169633d9ccaaa1c *man/RunChiSq_c.Rd
2dbc5a7e32ed5046ae8f868186f9cb1a *man/Stripper.Rd
c7d369fecd994417a57f1b2f00648f6f *man/Tab2GL.Loci.Rd
889f6ae98dfa5d7e191d59017327017b *man/Tab2GL.Sub.Rd
a6e04020118b9b9e23fa1689d56f638e *man/Tab2GL.wrapper.Rd
af289d882f1069ede1ad1d12fd13af4b *man/TableMaker.Rd
51ff9fca8145341eecd0309bc34b29ca *man/UpdateRelease.Rd
270114435346913a43b2aef29d4fa31f *man/buildHAPnames.Rd
0bd69aaa43cacbae19b1579a8911ad3e *man/buildHAPsets.Rd
d1197a66c22d5dd48a9eabf0260970ee *man/cci.Rd
ff447a4588c48761160e731e093feec0 *man/cci.pval.Rd
18f20c4159cff772b907dbe04b15c6eb *man/cci.pval.list.Rd
ec5c90345cf99170ab677faccacfd331 *man/getAllele.Count.Rd
fa0903118a40a10bac8343556ca6f1e1 *man/getCS.Mat.Rd
2420fb363986d033ced0d418fedaa383 *man/getCS.stat.Rd
8bedf78d175bcfc56d348463ab69f50d *man/getFileName.Rd
2b5c6f75b492da983fd32d3c674ed6c9 *man/getHap.Rd
81bff3ae7df331fe2197b8fcbd1d276f *man/getObsFreq.Rd
3d47df571495d649d9e48d1bf3fe495c *man/make2x2.Rd
5965061f3cdb3729ebe2d0ade1ff0340 *man/makeComb.Rd
6eb45949c8b6e3886c7890081760f85f *man/prepData.Rd
1a1b45cb27d13376893fa2d50aa0b033 *man/rmABstrings.Rd
09118ba9efb71521c8172fc07376a6e1 *man/summaryGeno.2.Rd
72a4bf4a385ef918ace6f0d8d7a503ed *vignettes/BIGDAWG.Rmd
c70a494904aac457fc9ea2bc4a434e7e *vignettes/GLSconvert.Rmd
