Package: ImprintCapASM
Type: Package
Title: Allele-Specific Methylation Analysis for Imprinted DMR
        Diagnostics
Version: 0.1.1
Authors@R: c(person(given = "Subham", family = "Saha",
                   email = "saha_19@outlook.com",
                   role = c("aut", "cre", "cph")),
             person(given = "Francesco", family = "Cecere",
                    email = "francesco.cecerengs@gmail.com",
                    role = "aut"),
             person(given = "Frederic", family = "Brioude",
                    email = "frederic.brioude@aphp.fr",
                    role = c("aut", "fnd")))
Description: Provides functions for SNP-phased allele-specific methylation (ASM)
    analysis across the 41 canonical human imprinted differentially methylated
    regions (DMRs). Reads are assigned to REF or ALT alleles based on
    bisulfite-aware SNP detection, enabling diagnosis of imprinting disorders
    from whole-genome bisulfite sequencing data.
    <https://github.com/19-saha/ImprintCapASM>.
License: MIT + file LICENSE
Encoding: UTF-8
Imports: data.table, readxl, writexl, vcfR, ggplot2, Rsamtools, tools
Suggests: testthat (>= 3.0.0), knitr, rmarkdown
SystemRequirements: samtools (>= 1.10)
VignetteBuilder: knitr
URL: https://github.com/19-saha/ImprintCapASM
BugReports: https://github.com/19-saha/ImprintCapASM/issues
Config/roxygen2/version: 8.0.0
NeedsCompilation: no
Packaged: 2026-06-24 17:26:10 UTC; subham_saha
Author: Subham Saha [aut, cre, cph],
  Francesco Cecere [aut],
  Frederic Brioude [aut, fnd]
Maintainer: Subham Saha <saha_19@outlook.com>
Repository: CRAN
Date/Publication: 2026-06-30 18:40:08 UTC
Built: R 4.7.0; ; 2026-08-04 04:08:10 UTC; windows
