Package: phyloregion
Type: Package
Title: Biogeographic Regionalization and Macroecology
Version: 1.0.9
Authors@R: c(person("Barnabas H.", "Daru", email= "darunabas@gmail.com", role = c("aut", "cre", "cph"), comment = c(ORCID = "0000-0002-2115-0257")),
             person("Piyal", "Karunarathne", role = c("aut"), comment = c(ORCID = "0000-0002-1934-145X")),
             person("Klaus", "Schliep", email="klaus.schliep@gmail.com", role = c("aut"), comment = c(ORCID = "0000-0003-2941-0161")),
             person("Xiaobei", "Zhao", role=c("ctb")),
             person("Albin", "Sandelin", role=c("ctb")),
             person("Luciano", "Pataro", role=c("ctb")))
Description: Computational infrastructure for biogeography, community ecology,
    and biodiversity conservation (Daru et al. 2020) <doi:10.1111/2041-210X.13478>.
    It is based on the methods described in Daru et al. (2020) <doi:10.1038/s41467-020-15921-6>.
    The original conceptual work is described in Daru et al. (2017) <doi:10.1016/j.tree.2017.08.013>
    on patterns and processes of biogeographical regionalization. Additionally, the package
    contains fast and efficient functions to compute more standard conservation measures
    such as phylogenetic diversity, phylogenetic endemism, evolutionary distinctiveness
    and global endangerment, as well as compositional turnover (e.g., beta diversity).
Imports: ape, phangorn, Matrix, betapart, parallel, methods,
        colorspace, igraph, clustMixType, maptpx, terra, vegan,
        predicts, smoothr
Suggests: tinytest, knitr, rmarkdown, mapproj, survival, rJava,
        phyloseq, V8
VignetteBuilder: knitr
URL: https://github.com/darunabas/phyloregion,
        https://phyloregion.com/index.html
BugReports: https://github.com/darunabas/phyloregion/issues
License: AGPL-3
Encoding: UTF-8
RoxygenNote: 7.3.2
biocViews: Software
NeedsCompilation: no
Depends: R (>= 4.1.0)
Packaged: 2025-07-15 05:38:26 UTC; bdaru
Author: Barnabas H. Daru [aut, cre, cph] (ORCID:
    <https://orcid.org/0000-0002-2115-0257>),
  Piyal Karunarathne [aut] (ORCID:
    <https://orcid.org/0000-0002-1934-145X>),
  Klaus Schliep [aut] (ORCID: <https://orcid.org/0000-0003-2941-0161>),
  Xiaobei Zhao [ctb],
  Albin Sandelin [ctb],
  Luciano Pataro [ctb]
Maintainer: Barnabas H. Daru <darunabas@gmail.com>
Repository: CRAN
Date/Publication: 2025-07-15 06:20:02 UTC
Built: R 4.7.0; ; 2026-08-11 05:00:51 UTC; windows
