Package: allelematch
Type: Package
Title: Identifying Unique Multilocus Genotypes where Genotyping Error
        and Missing Data may be Present
Version: 3.0.0
Date: 2026-07-21
Author: Paul Galpern [aut],
  Micheline Manseau [aut],
  Pete Hettinga [aut],
  Karen Smith [aut],
  Paul Wilson [aut],
  Todd Cross [cre]
Authors@R: c(person(given = "Paul",
                    family = "Galpern",
                    role = c("aut"),
                    email = "pgalpern@gmail.com"
                    ),
            person(given = "Micheline",
                    family = "Manseau",
                    role = c("aut")
                    ),
            person(given = "Pete",
                    family = "Hettinga",
                    role = c("aut")
                    ),
            person(given = "Karen",
                    family = "Smith",
                    role = c("aut")
                    ),
            person(given = "Paul",
                    family = "Wilson",
                    role = c("aut")
                    ),
            person(given = "Todd",
                    family = "Cross",
                    role = c("cre"),
                    email = "todd.cross@gmail.com")
                    )
Maintainer: Todd Cross <todd.cross@gmail.com>
Description: Tools for the identification of unique multilocus genotypes when
    both genotyping error and missing data may be present. Includes a data
    pre-screening utility to analyze pairwise locus overlap and protect against
    underlying mathematical sorting constraints. Targeted for use with large
    datasets and databases containing multiple samples of each individual (a common
    situation in conservation genetics, particularly in non-invasive wildlife
    sampling applications). Functions explicitly incorporate missing data and can
    tolerate allele mismatches created by genotyping error. If you use this package,
    please cite the original publication in Molecular Ecology Resources (Galpern
    et al., 2012), the details for which can be generated using
    citation('allelematch'). The complete user manual and analytical tutorials
    are included locally as an R vignette and can be accessed within an active R
    session using vignette('allelematch').
License: GPL (>= 2)
Depends: R (>= 3.5.0), dynamicTreeCut
URL: <doi:10.1111%2Fj.1755-0998.2012.03137.x>
LazyLoad: yes
Suggests: knitr, rmarkdown
VignetteBuilder: knitr
NeedsCompilation: no
Packaged: 2026-07-23 22:23:33 UTC; toddbcross
Repository: CRAN
Date/Publication: 2026-07-24 04:30:02 UTC
Built: R 4.7.0; ; 2026-08-04 01:27:00 UTC; windows
