Package: indelmiss
Type: Package
Title: Insertion Deletion Analysis While Accounting for Possible
        Missing Data
Version: 1.0.10
Date: 2023-09-13
Author: Utkarsh J. Dang and G. Brian Golding
Maintainer: Utkarsh J. Dang <utkarshdang@cunet.carleton.ca>
Description: Genome-wide gene insertion and deletion rates can be modelled in a maximum 
    likelihood framework with the additional flexibility of modelling potential missing 
    data using the models included within. These models simultaneously estimate insertion 
    and deletion (indel) rates of gene families and proportions of "missing" data for 
    (multiple) taxa of interest. The likelihood framework is utilized for parameter 
    estimation. A phylogenetic tree of the taxa and gene presence/absence patterns 
    (with data ordered by the tips of the tree) are required. See Dang et al.
    (2016) <doi:10.1534/genetics.116.191973> for more details.
License: GPL (>= 2)
Imports: Rcpp (>= 0.11.2), ape (>= 3.2), numDeriv (>= 2012.9.1),
        phangorn (>= 1.99.13)
LinkingTo: Rcpp
Suggests: testthat
Depends: R (>= 2.10)
LazyData: true
NeedsCompilation: yes
Packaged: 2023-09-15 13:40:42 UTC; udang
Repository: CRAN
Date/Publication: 2023-09-15 16:52:05 UTC
Built: R 4.6.0; x86_64-apple-darwin20; 2026-04-27 17:41:53 UTC; unix
Archs: indelmiss.so.dSYM
