R: Social Mixing Matrices for Infectious Disease Modelling

# Social Mixing Matrices for Infectious Disease Modelling

## Documentation for package ‘socialmixr’ version 0.6.0

- DESCRIPTION file.
- User guides, package vignettes and other documentation.
- Package NEWS.

## Help Pages

agegroups_to_limits | Convert age groups to lower age limits
assign_age_groups | Assign age groups in survey data
as_contact_survey | Check contact survey data
check | Check contact survey data
check.contact_survey | Check contact survey data
clean | Clean contact survey data
clean.contact_survey | Clean contact survey data
compute_matrix | Compute contact matrix from prepared survey data
contact_age_distribution | Extract the empirical age distribution of contacts from a survey
contact_matrix | Generate a contact matrix from diary survey data
download_survey | Download a survey from its Zenodo repository
get_citation | Citation for a survey
get_survey | Get a survey, either from its Zenodo repository, a set of files, or a survey variable
is_doi | Checks if a character string is a DOI
limits_to_agegroups | Convert lower age limits to age groups.
list_surveys | List all surveys available for download
load_survey | Load a survey from local files
matrix_plot | Draws an image plot of a contact matrix with a legend strip and the numeric values in the cells.
per_capita | Convert a contact matrix to per-capita rates
polymod | Social contact data from 8 European countries
pop_age | Change age groups in population data
reduce_agegroups | Reduce the number of age groups given a broader set of limits
split_matrix | Decompose a contact matrix into mean contacts, normalisation and assortativity
survey | Contact survey
survey_countries | List all countries contained in a survey
survey_country_population | Get survey country population data
symmetrise | Symmetrise a contact matrix
weigh | Weigh survey participants
wpp_age | Get age-specific population data according to the World Population Prospects 2017 edition
wpp_countries | List all countries and regions for which socialmixr has population data
[.contact_survey | Subset a contact survey