# Generated by roxygen2: do not edit by hand

S3method(print,qploidy_area_ploidy_estimation)
S3method(print,qploidy_standardization)
export(all_resolutions_plots)
export(area_estimate_ploidy)
export(clean_summary)
export(find_header_line)
export(get_R_theta)
export(get_aneuploids)
export(get_baf)
export(get_baf_par)
export(get_centers)
export(get_zscore)
export(merge_arms_format)
export(plot_baf)
export(plot_baf_hist)
export(plot_baf_with_ploidy_guides)
export(plot_qploidy_standardization)
export(plot_xy_with_ploidy_guides)
export(qploidy_read_vcf)
export(read_axiom)
export(read_illumina_array)
export(read_qploidy_standardization)
export(rm_outlier)
export(simulate_axiom_summary)
export(simulate_illumina_file)
export(simulate_standardization_input)
export(simulate_vcf)
export(standardize)
export(summary_to_fitpoly)
export(updog_centers)
export(vcf_sanity_check)
export(write_qploidy_standardization)
import(dplyr)
import(ggplot2)
import(multtest)
import(tidyr)
import(vcfR)
import(vroom)
importFrom(dplyr,filter)
importFrom(dplyr,full_join)
importFrom(dplyr,group_by)
importFrom(dplyr,inner_join)
importFrom(dplyr,mutate)
importFrom(dplyr,summarise)
importFrom(dplyr,summarize)
importFrom(ggpubr,annotate_figure)
importFrom(ggpubr,ggarrange)
importFrom(ggpubr,text_grob)
importFrom(magrittr,"%>%")
importFrom(parallel,clusterEvalQ)
importFrom(parallel,clusterExport)
importFrom(parallel,makeCluster)
importFrom(parallel,parLapply)
importFrom(parallel,stopCluster)
importFrom(stats,cor)
importFrom(stats,lm)
importFrom(stats,median)
importFrom(stats,pnorm)
importFrom(stats,rbinom)
importFrom(stats,rnorm)
importFrom(stats,runif)
importFrom(stats,sd)
importFrom(stats,setNames)
importFrom(tidyr,pivot_longer)
importFrom(tidyr,pivot_wider)
importFrom(utils,write.table)
importFrom(vroom,vroom_write)
