R: Basic Functions for Pre-Processing Microarrays

# Basic Functions for Pre-Processing Microarrays

## Documentation for package ‘PreProcess’ version 3.1.7

- DESCRIPTION file.
- User guides, package vignettes and other documentation.
- Package NEWS.

## Help Pages

analyze | Methods "process" and "analyze"
analyze-method | Methods "process" and "analyze"
analyze-method | Class "CompleteChannel"
as.data.frame-method | Class "CompleteChannel"
Channel | Class "Channel"
Channel-class | Class "Channel"
channelize | Method "channelize"
channelize-method | Class "CompleteChannel"
channelize-method | Method "channelize"
ChannelType | Class "ChannelType"
ChannelType-class | Class "ChannelType"
CompleteChannel | Class "CompleteChannel"
CompleteChannel-class | Class "CompleteChannel"
ellipse | OOMPA graphical utility functions
f.above.thresh | OOMPA Statistical Utility Functions
f.cord | OOMPA Statistical Utility Functions
f.oneway.rankings | OOMPA Statistical Utility Functions
f.qq | OOMPA graphical utility functions
f.qt | OOMPA graphical utility functions
fliplr | OOMPA Matrix Utility Functions
flipud | OOMPA Matrix Utility Functions
getDesign | Class "ChannelType"
hist-method | Class "Channel"
image-method | Class "Channel"
image-method | Class "CompleteChannel"
makeDefaultPipeline | Class "Pipeline"
Pipeline | Class "Pipeline"
Pipeline-class | Class "Pipeline"
PIPELINE.MDACC.DEFAULT | Class "Pipeline"
PIPELINE.STANDARD | Class "Pipeline"
plot-method | Class "Channel"
plot-method | Class "CompleteChannel"
print-method | Class "ChannelType"
print-method | Class "Channel"
print-method | Class "CompleteChannel"
PROC.BACKGROUND | Class "CompleteChannel"
PROC.CORRECTED.SIGNAL | Class "CompleteChannel"
PROC.GLOBAL.NORMALIZATION | Class "Processor"
PROC.LOG.TRANSFORM | Class "Processor"
PROC.MEDIAN.EXPRESSED.NORMALIZATION | Class "Processor"
PROC.NEG.CORRECTED.SIGNAL | Class "CompleteChannel"
PROC.SD.SIGNAL | Class "CompleteChannel"
PROC.SIGNAL | Class "CompleteChannel"
PROC.SIGNAL.TO.NOISE | Class "CompleteChannel"
PROC.SUBSET.MEAN.NORMALIZATION | Class "Processor"
PROC.SUBSET.NORMALIZATION | Class "Processor"
PROC.SUBTRACTOR | Class "Processor"
PROC.THRESHOLD | Class "Processor"
process | Methods "process" and "analyze"
process-method | Methods "process" and "analyze"
process-method | Class "Processor"
process-method | Class "Pipeline"
process-method | Class "CompleteChannel"
Processor | Class "Processor"
Processor-class | Class "Processor"
setDesign | Class "ChannelType"
show-method | Class "ChannelType"
show-method | Class "Channel"
show-method | Class "CompleteChannel"
summary-method | Class "ChannelType"
summary-method | Class "Channel"
summary-method | Class "Processor"
summary-method | Class "Pipeline"
summary-method | Class "CompleteChannel"