Package: OpenSpecy
Type: Package
Title: Analyze, Process, Identify, and Share Raman and (FT)IR Spectra
Version: 1.5.3
Date: 2025-04-26
Authors@R: c(person("Win", "Cowger", role = c("cre", "aut", "dtc"),
      email = "wincowger@gmail.com",
      comment = c(ORCID = "0000-0001-9226-3104")),
    person("Zacharias", "Steinmetz", role = c("aut"),
      email = "z.steinmetz@rptu.de",
      comment = c(ORCID = "0000-0001-6675-5033")),
    person("Hazel", "Vaquero", role = c("aut"),
      email = "hvaquero98@gmail.com",
      comment = c(ORCID = "0009-0001-5468-2049")),
    person("Nick", "Leong", role = c("aut"),
      comment = c(ORCID = "0009-0008-3313-4132")),
    person("Andrea", "Faltynkova", role = c("aut", "dtc"),
      comment = c(ORCID = "0000-0003-2523-3137")),
    person("Hannah", "Sherrod", role = c("aut"),
      comment = c(ORCID = "0009-0001-0497-8693")),
    person("Andrew B", "Gray", role = c("ctb"),
      comment = c(ORCID = "0000-0003-2252-7367")), 
    person("Hannah", "Hapich", role = c("ctb"),
      comment = c(ORCID = "0000-0003-0000-6632")),
    person("Jennifer", "Lynch", role = c("ctb", "dtc"),
      comment = c(ORCID = "0000-0003-3572-8782")),
    person("Hannah", "De Frond", role = c("ctb", "dtc"),
      comment = c(ORCID = "0000-0003-1199-0727")),
    person("Keenan", "Munno", role = c("ctb", "dtc"),
      comment = c(ORCID = "0000-0003-2916-5944")),
    person("Chelsea", "Rochman", role = c("ctb", "dtc"),
      comment = c(ORCID = "0000-0002-7624-711X")),
    person("Sebastian", "Primpke", role = c("ctb", "dtc"),
      comment = c(ORCID = "0000-0001-7633-8524")),
    person("Orestis", "Herodotou", role = c("ctb")),
    person("Mary C", "Norris", role = c("ctb")),
    person("Christine M", "Knauss", role = c("ctb"), 
      comment = c(ORCID = "0000-0003-4404-8922")), 
    person("Aleksandra", "Karapetrova", role = c("ctb", "dtc", "rev"),
      comment = c(ORCID = "0000-0002-9856-1644")),
    person("Vesna", "Teofilovic", role = c("ctb"),
      comment = c(ORCID = "0000-0002-3557-1482")),
    person("Laura A. T.", "Markley", role = c("ctb"),
      comment = c(ORCID = "0000-0003-0620-8366")),
    person("Shreyas", "Patankar", role = c("ctb", "dtc")),
    person("Rachel", "Kozloski", role = c("ctb", "dtc"),
      comment = c(ORCID = "0000-0003-1211-9351")),
    person("Samiksha", "Singh", role = c("ctb")),
    person("Katherine", "Lasdin", role = c("ctb")),
    person("Cristiane", "Vidal", role = c("ctb"), 
      comment = c(ORCID = "0000-0001-6363-9475")),
    person("Clare", "Murphy-Hagan", role = c("ctb"), 
      comment = c(ORCID = "0009-0009-9629-2856")),
    person("Philipp", "Baumann", role = c("ctb"),
      email = "info@spectral-cockpit.space",
      comment = c(ORCID = "0000-0002-3194-8975")),
    person("Pierre", "Roudier", role = c("ctb")),
    person("National Renewable Energy Laboratory", role = c("fnd")), 
    person("Possibility Lab", role = c("fnd")))
Description: Raman and (FT)IR spectral analysis tool for plastic particles and
    other environmental samples (Cowger et al. 2021,
    <doi:10.1021/acs.analchem.1c00123>). With read_any(), Open Specy provides a
    single function for reading individual, batch, or map spectral data files
    like .asp, .csv, .jdx, .spc, .spa, .0, and .zip. process_spec() simplifies
    processing spectra, including smoothing, baseline correction,
    range restriction and flattening, intensity conversions, wavenumber
    alignment, and min-max normalization. Spectra can be identified in batch
    using an onboard reference library (Cowger et al. 2020,
    <doi:10.1177/0003702820929064>) using match_spec(). A Shiny app is available
    via run_app() or online at <https://www.openanalysis.org/openspecy/>.
URL: https://github.com/wincowgerDEV/OpenSpecy-package/,
        https://raw.githack.com/wincowgerDEV/OpenSpecy-package/main/docs/index.html
BugReports: https://github.com/wincowgerDEV/OpenSpecy-package/issues/
License: CC BY 4.0
Encoding: UTF-8
LazyLoad: true
LazyData: true
VignetteBuilder: knitr
Depends: R (>= 4.3.0)
Imports: methods, data.table, jsonlite, yaml, caTools, hyperSpec,
        mmand, plotly, digest, signal, glmnet, jpeg, shiny
Suggests: knitr, rmarkdown, testthat (>= 3.1.9), shinyjs, shinyWidgets,
        bs4Dash, dplyr, DT, ggplot2
RoxygenNote: 7.3.2
Config/testthat/edition: 3
NeedsCompilation: no
Packaged: 2025-04-26 15:18:11 UTC; winco
Author: Win Cowger [cre, aut, dtc] (<https://orcid.org/0000-0001-9226-3104>),
  Zacharias Steinmetz [aut] (<https://orcid.org/0000-0001-6675-5033>),
  Hazel Vaquero [aut] (<https://orcid.org/0009-0001-5468-2049>),
  Nick Leong [aut] (<https://orcid.org/0009-0008-3313-4132>),
  Andrea Faltynkova [aut, dtc] (<https://orcid.org/0000-0003-2523-3137>),
  Hannah Sherrod [aut] (<https://orcid.org/0009-0001-0497-8693>),
  Andrew B Gray [ctb] (<https://orcid.org/0000-0003-2252-7367>),
  Hannah Hapich [ctb] (<https://orcid.org/0000-0003-0000-6632>),
  Jennifer Lynch [ctb, dtc] (<https://orcid.org/0000-0003-3572-8782>),
  Hannah De Frond [ctb, dtc] (<https://orcid.org/0000-0003-1199-0727>),
  Keenan Munno [ctb, dtc] (<https://orcid.org/0000-0003-2916-5944>),
  Chelsea Rochman [ctb, dtc] (<https://orcid.org/0000-0002-7624-711X>),
  Sebastian Primpke [ctb, dtc] (<https://orcid.org/0000-0001-7633-8524>),
  Orestis Herodotou [ctb],
  Mary C Norris [ctb],
  Christine M Knauss [ctb] (<https://orcid.org/0000-0003-4404-8922>),
  Aleksandra Karapetrova [ctb, dtc, rev]
    (<https://orcid.org/0000-0002-9856-1644>),
  Vesna Teofilovic [ctb] (<https://orcid.org/0000-0002-3557-1482>),
  Laura A. T. Markley [ctb] (<https://orcid.org/0000-0003-0620-8366>),
  Shreyas Patankar [ctb, dtc],
  Rachel Kozloski [ctb, dtc] (<https://orcid.org/0000-0003-1211-9351>),
  Samiksha Singh [ctb],
  Katherine Lasdin [ctb],
  Cristiane Vidal [ctb] (<https://orcid.org/0000-0001-6363-9475>),
  Clare Murphy-Hagan [ctb] (<https://orcid.org/0009-0009-9629-2856>),
  Philipp Baumann [ctb] (<https://orcid.org/0000-0002-3194-8975>),
  Pierre Roudier [ctb],
  National Renewable Energy Laboratory [fnd],
  Possibility Lab [fnd]
Maintainer: Win Cowger <wincowger@gmail.com>
Repository: CRAN
Date/Publication: 2025-04-26 15:40:02 UTC
Built: R 4.3.3; ; 2025-04-26 16:52:23 UTC; unix
