R: Modelling Phylogenetic Signals using Eigenvector Maps

# Modelling Phylogenetic Signals using Eigenvector Maps

## Documentation for package ‘MPSEM’ version 0.6-1

- DESCRIPTION file.
- User guides, package vignettes and other documentation.

## Help Pages

MPSEM-package | Modelling Phylogenetic Signals using Eigenvector Maps
add.edge | MPSEM graph Manipulation Functions
add.vertex | MPSEM graph Manipulation Functions
as.data.frame.PEM | Class and Methods for Phylogenetic Eigenvector Maps (PEM)
collapse.vertex | MPSEM graph Manipulation Functions
dstGraph | Distance-Based Directed Graph
EvolveOptimMarkovTree | Simulate the Evolution of a Quantitative Trait
getAncGraphLocations | Phylogenetic Eigenvector Maps
getGraphLocations | Phylogenetic Eigenvector Maps
graph | Class and Method for Directed Graphs
graph-class | Class and Method for Directed Graphs
graph-functions | MPSEM graph Manipulation Functions
InflMat | Phylogenetic Eigenvector Maps
lm-utils | Linear Modelling Utility Functions
lmforwardsequentialAICc | Linear Modelling Utility Functions
lmforwardsequentialsidak | Linear Modelling Utility Functions
Locations2PEMscores | Phylogenetic Eigenvector Maps
OUvar | Simulate the Evolution of a Quantitative Trait
PEM | Class and Methods for Phylogenetic Eigenvector Maps (PEM)
PEM-class | Class and Methods for Phylogenetic Eigenvector Maps (PEM)
PEM-functions | Phylogenetic Eigenvector Maps
PEM.build | Phylogenetic Eigenvector Maps
PEM.fitSimple | Phylogenetic Eigenvector Maps
PEM.forcedSimple | Phylogenetic Eigenvector Maps
PEM.updater | Phylogenetic Eigenvector Maps
PEMvar | Simulate the Evolution of a Quantitative Trait
PEMweights | Phylogenetic Eigenvector Maps
Phylo2DirectedGraph | MPSEM graph Manipulation Functions
pop.graph | MPSEM graph Manipulation Functions
predict.PEM | Class and Methods for Phylogenetic Eigenvector Maps (PEM)
print.graph | Class and Method for Directed Graphs
print.PEM | Class and Methods for Phylogenetic Eigenvector Maps (PEM)
rm.edge | MPSEM graph Manipulation Functions
rm.vertex | MPSEM graph Manipulation Functions
simulation | Simulate the Evolution of a Quantitative Trait
trait | Simulate the Evolution of a Quantitative Trait
trait-simulator | Simulate the Evolution of a Quantitative Trait
TraitOUsimTree | Simulate the Evolution of a Quantitative Trait
TraitVarGraphSim | Simulate the Evolution of a Quantitative Trait
utils | Linear Modelling Utility Functions