R: A Collection of Functions for Directional Data Analysis

# A Collection of Functions for Directional Data Analysis

## Documentation for package ‘Directional’ version 7.2

- DESCRIPTION file.

## Help Pages

A B C D E F G H I K L M N O P Q R S T V W

Directional-package | This is an R package that provides methods for the statistical analysis of directional data, including massive (very large scale) directional data.

## -- A --

acg.mle | MLE of (hyper-)spherical rotationally symmetric distributions
africa | maps of the world and the continents
Arotation | Rotation axis and angle of rotation given a rotation matrix
asia | maps of the world and the continents

## -- B --

bic.mixpkbd | BIC to choose the number of components in a model based clustering using mixtures of rotationally symmetric distributions
bic.mixspcauchy | BIC to choose the number of components in a model based clustering using mixtures of rotationally symmetric distributions
bic.mixvmf | BIC to choose the number of components in a model based clustering using mixtures of rotationally symmetric distributions

## -- C --

cardio.mle | MLE of some circular distributions
cipc.mle | MLE of some circular distributions
cipc.reg | Circular or angular regression
circ.cor1 | Circular correlations between two circular variables
circ.cor2 | Circular correlations between two circular variables
circ.cors1 | Circular correlations between two circular variables
circ.cors2 | Circular correlations between two circular variables
circ.dcor | Circular distance correlation between two circular variables
circ.summary | Summary statistics for circular data
circbeta.mle | MLE of some circular distributions
circexp.mle | MLE of some circular distributions
circlin.cor | Circular-linear correlation
circpurka.reg | Circular or angular regression
colspml.mle | Column-wise MLE of the angular Gaussian and the von Mises Fisher distributions
colvm.mle | Column-wise MLE of the angular Gaussian and the von Mises Fisher distributions
colwatsons | Column-wise uniformity tests for circular data
conc.test | A test for testing the equality of the concentration parameter among g samples, where g >= 2 for ciruclar data
cosap | Conversion of cosines to azimuth and plunge
cosnn | The k-nearest neighbours using the cosinus distance

## -- D --

dcardio | Density of some circular distributions
dcipc | Density of some circular distributions
dcircbeta | Density of some circular distributions
dcircexp | Density of some circular distributions
dcircpurka | Density of some circular distributions
desag | Density of the spherical ESAG and Kent distributions
dESAGd | Density of the spherical ESAG and Kent distributions
dgcpc | Density of some circular distributions
dggvm | Density of some circular distributions
dirda | Prediction of a new observation using discriminant analysis based on some distributions
dirda.cv | Cross validation for estimating the classification rate
dirknn | k-NN algorithm using the arc cosinus distance
dirknn.tune | k-NN algorithm using the arc cosinus distance. Tuning the k neigbours
dkent | Density of the spherical ESAG and Kent distributions
dmixpkbd | Density of a mixture of rotationally symmetric distributions
dmixspcauchy | Density of a mixture of rotationally symmetric distributions
dmixvmf | Density of a mixture of rotationally symmetric distributions
dmmvm | Density of some circular distributions
dpkbd | Density of some (hyper-)spherical distributions
dpurka | Density of some (hyper-)spherical distributions
dsespc | Density of the SESPC distribution
dspcauchy | Density of some (hyper-)spherical distributions
dspml | Density of some circular distributions
dvm | Density of some circular distributions
dvmf | Density of some (hyper-)spherical distributions
dwood | Density of the Wood bimodal distribution on the sphere
dwrapcauchy | Density of some circular distributions
dwrapnormal | Density of some circular distributions

## -- E --

embed.aov | Analysis of variance for (hyper-)spherical data
embed.boot | Bootstrap 2-sample mean test for (hyper-)spherical data
embed.circaov | Analysis of variance for circular data
embed.perm | Permutation based 2-sample mean test for (hyper-)spherical data
embedcirc.boot | Bootstrap 2-sample mean test for circular data
embedcirc.perm | Permutation based 2-sample mean test for circular data
esag.contour | Contour plot (on the plane) of the ESAG and Kent and ESAG distributions without any data
esag.mle | MLE of the ESAG distribution
esag.reg | Spherical regression using the ESAG distribution
ESAGd.mle | MLE of the ESAG distribution
etoa | Transform unit vectors to angular data
euclid | Euclidean transformation
euclid.inv | Inverse of the Euclidean transformation
eul2rot | Construct a rotation matrix on SO(3) from the Euler angles.
europe | maps of the world and the continents

## -- F --

f.rbing | Simulating from a Bingham distribution
fb.saddle | Saddlepoint approximations of the Fisher-Bingham distributions
fishkent | Hypothesis test for von Mises-Fisher distribution over Kent distribution

## -- G --

gcpc.mle | MLE of some circular distributions
gcpc.reg | Circular or angular regression
ggvm.mle | MLE of some circular distributions
group.gof | Goodness of fit test for grouped data
group.vm | Summary statistics for grouped circular data

## -- H --

habeck.rot | Generation of three-dimensional random rotations using Habeck's algorithm.
haversine.dist | Harvesine distance matrix
hcf.aov | Analysis of variance for (hyper-)spherical data
hcf.boot | Bootstrap 2-sample mean test for (hyper-)spherical data
hcf.circaov | Analysis of variance for circular data
hcf.perm | Permutation based 2-sample mean test for (hyper-)spherical data
hcfboot | Bootstrap ANOVA for (hyper-)spherical data
hcfcirc.boot | Bootstrap 2-sample mean test for circular data
hcfcirc.perm | Permutation based 2-sample mean test for circular data
hcfcircboot | Bootstrap ANOVA for circular data
hclr.aov | Analysis of variance for (hyper-)spherical data
hclr.boot | Bootstrap 2-sample mean test for (hyper-)spherical data
hclr.circaov | Analysis of variance for circular data
hclr.perm | Permutation based 2-sample mean test for (hyper-)spherical data
hclrcirc.boot | Bootstrap 2-sample mean test for circular data
hclrcirc.perm | Permutation based 2-sample mean test for circular data
het.aov | Analysis of variance for (hyper-)spherical data
het.boot | Bootstrap 2-sample mean test for (hyper-)spherical data
het.circaov | Analysis of variance for circular data
het.perm | Permutation based 2-sample mean test for (hyper-)spherical data
hetboot | Bootstrap ANOVA for (hyper-)spherical data
hetcirc.boot | Bootstrap 2-sample mean test for circular data
hetcirc.perm | Permutation based 2-sample mean test for circular data
hetcircboot | Bootstrap ANOVA for circular data
hspher.reg | Hyper spherical-spherical regression

## -- I --

iag.mle | MLE of (hyper-)spherical rotationally symmetric distributions
iag.reg | Spherical regression using rotationally symmetric distributions
iagd | Density of some (hyper-)spherical distributions
iagesag | Hypothesis test for IAG distribution over the ESAG distribution

## -- K --

kent.contour | Contour plot (on the plane) of the ESAG and Kent and ESAG distributions without any data
kent.logcon | Logarithm of the Kent distribution normalizing constant
kent.mle | MLe of the Kent distribution
knn.reg | k-NN regression with Euclidean or (hyper-)spherical response and or predictor variables
knnreg.tune | Tuning of the k-NN regression with Euclidean or (hyper-)spherical response and or predictor variables
kuiper | Uniformity tests for circular data.

## -- L --

lambert | Lambert's equal area projection
lambert.inv | Inverse of Lambert's equal area projection
lr.aov | Analysis of variance for (hyper-)spherical data
lr.boot | Bootstrap 2-sample mean test for (hyper-)spherical data
lr.circaov | Analysis of variance for circular data
lr.perm | Permutation based 2-sample mean test for (hyper-)spherical data
lrcirc.boot | Bootstrap 2-sample mean test for circular data
lrcirc.perm | Permutation based 2-sample mean test for circular data

## -- M --

makefolds | Generate random folds for cross-validation
matrixfisher.mle | MLE of the Matrix Fisher distribution on SO(3)
meandir.test | Test for a given mean direction
mediandir | Fast calculation of the spherical and hyperspherical median
mediandir_2 | Fast calculation of the spherical and hyperspherical median
mixpkbd.mle | Mixtures of rotationally symmetric distributions
mixspcauchy.mle | Mixtures of rotationally symmetric distributions
mixvmf.contour | Contour plot of a mixture of von Mises-Fisher distributions model for spherical data only.
mixvmf.mle | Mixtures of rotationally symmetric distributions
mmvm.mle | MLE of some circular distributions
multispml.mle | MLE of some circular distributions with multiple samples
multivm.mle | MLE of some circular distributions with multiple samples
multivmf.mle | MLE of (hyper-)spherical rotationally symmetric distributions

## -- N --

north.america | maps of the world and the continents
nsmedian | Normalised spatial median for directional data

## -- O --

oceania | maps of the world and the continents

## -- P --

pc.test | Hypothesis test for SIPC distribution over the SESPC distribution
pcardio | Cumulative distribution function of circular distributions
pcipc | Cumulative distribution function of circular distributions
pcircbeta | Cumulative distribution function of circular distributions
pcircexp | Cumulative distribution function of circular distributions
pcircpurka | Cumulative distribution function of circular distributions
pgcpc | Cumulative distribution function of circular distributions
pk2 | Two sample location test for (hyper-)spherical data
pkbd.contour | Contour plots of some rotationally symmetric distributions
pkbd.mle | MLE of (hyper-)spherical rotationally symmetric distributions
pkbd.mle2 | MLE of (hyper-)spherical rotationally symmetric distributions
pkbd.reg | (Hyper-)spherical regression using the rotational symmetric distributions
pkbd.reg2 | (Hyper-)spherical regression using the rotational symmetric distributions
pkbd2test | Two sample location test for (hyper-)spherical data
pmmvm | Cumulative distribution function of circular distributions
pspml | Cumulative distribution function of circular distributions
ptest | Projections based test of uniformity
purka.contour | Contour plots of some rotationally symmetric distributions
purka.mle | MLE of the Purkayashta distribution
pvm | Cumulative distribution function of circular distributions
pwrapcauchy | Cumulative distribution function of circular distributions

## -- Q --

quat2rot | Converting an unsigned unit quaternion to rotation matrix on SO(3)

## -- R --

racg | Angular central Gaussian random values simulation
rayleigh | Rayleigh's test of uniformity
rbingham | Simulation from a Bingham distribution using any symmetric matrix A
rcipc | Simulation of random values from some circular distributions
rcircbeta | Simulation of random values from some circular distributions
rcircexp | Simulation of random values from some circular distributions
rcircpurka | Simulation of random values from some circular distributions
read.fbm | Read a file as a Filebacked Big Matrix
resag | Simulation of random values from the ESAG distribution
rESAGd | Simulation of random values from the ESAG distribution
rfb | Simulation of random values from a spherical Fisher-Bingham distribution
rgcpc | Simulation of random values from some circular distributions
riag | Simulation of random values from rotationally symmetric distributions
rkent | Simulation of random values from a spherical Kent distribution
rmatrixfisher | Simulation from a Matrix Fisher distribution on SO(3)
rmixpkbd | Simulation of random values from a mixture of rotationally symmetric distributions
rmixspcauchy | Simulation of random values from a mixture of rotationally symmetric distributions
rmixvmf | Simulation of random values from a mixture of rotationally symmetric distributions
rot.matrix | Rotation matrix from a rotation axis and angle of rotation
rot2eul | Compute the Euler angles from a rotation matrix on SO(3).
rot2quat | Converting a rotation matrix on SO(3) to an unsigned unit quaternion
rotation | Rotation matrix to rotate a spherical vector along the direction of another
rpkbd | Simulation of random values from rotationally symmetric distributions
rsespc | Simulation of random values from the SESPC distribution
rsop | Random sample of matrices in SO(p)
rspcauchy | Simulation of random values from rotationally symmetric distributions
rspml | Simulation of random values from some circular distributions
rvmf | Simulation of random values from rotationally symmetric distributions
rvonmises | Simulation of random values from some circular distributions
rwrapcauchy | Simulation of random values from some circular distributions

## -- S --

score.cipc | Score test for many simple CIPC and SPML regressions
score.spml | Score test for many simple CIPC and SPML regressions
sespc.mle | MLE of the SESPC distribution
sespc.reg | Spherical regression using the SESPC distribution
sipc.mle | MLE of (hyper-)spherical rotationally symmetric distributions
sipc.reg | Spherical regression using rotationally symmetric distributions
south.america | maps of the world and the continents
sp2 | Two sample location test for (hyper-)spherical data
spcauchy.contour | Contour plots of some rotationally symmetric distributions
spcauchy.mle | MLE of (hyper-)spherical rotationally symmetric distributions
spcauchy.mle2 | MLE of (hyper-)spherical rotationally symmetric distributions
spcauchy.reg | (Hyper-)spherical regression using the rotational symmetric distributions
spcauchy2test | Two sample location test for (hyper-)spherical data
spher.cor | Spherical-spherical correlation
spher.dcor | Spherical and hyper-spherical distance correlation
spher.esag.contour | Contour plot (on the sphere) of the ESAG and Kent distributions
spher.kent.contour | Contour plot (on the sphere) of the ESAG and Kent distributions
spher.mixvmf.contour | Contour plot (on the sphere) of a mixture of von Mises-Fisher distributions
spher.pkbd.contour | Contour plot (on the sphere) of some spherical rotationally symmetric distributions
spher.purka.contour | Contour plot (on the sphere) of some spherical rotationally symmetric distributions
spher.reg | Spherical-Spherical regression
spher.sespc.contour | Contour plot (on the sphere) of the SESPC distribution
spher.spcauchy.contour | Contour plot (on the sphere) of some spherical rotationally symmetric distributions
spher.vmf.contour | Contour plot (on the sphere) of some spherical rotationally symmetric distributions
spherconc.test | Test for equality of concentration parameters for spherical data
sphereplot | Interactive 3D plot of spherical data
spml.fbed | Forward Backward Early Dropping selection for circular data using the SPML regression
spml.mle | MLE of some circular distributions
spml.nb | Naive Bayes classifiers for directional data
spml.reg | Circular or angular regression
spml.regs | Many simple circular or angular regressions
spmlnb.pred | Prediction with some naive Bayes classifiers for circular data

## -- T --

tang.conc | A test for testing the equality of the concentration parameter among g samples, where g >= 2 for ciruclar data

## -- V --

vec | Generation of unit vector(s) with a given angle
visual.check | Check visually whether matrix Fisher samples is correctly generated or not.
vm.kde | Kernel density estimation of circular data with a von Mises kernel
vm.nb | Naive Bayes classifiers for directional data
vmf.contour | Contour plots of some rotationally symmetric distributions
vmf.kde | Kernel density estimation for (hyper-)spherical data using a von Mises-Fisher kernel
vmf.kerncontour | Contour plot of spherical data using a von Mises-Fisher kernel density estimate
vmf.mle | MLE of (hyper-)spherical rotationally symmetric distributions
vmf.reg | Spherical regression using rotationally symmetric distributions
vmf2 | Two sample location test for (hyper-)spherical data
vmf2test | Two sample location test for (hyper-)spherical data
vmfkde.tune | Tuning of the bandwidth parameter in the von Mises-Fisher kernel for (hyper-)spherical data
vmfreg | (Hyper-)spherical regression using the rotational symmetric distributions
vmkde.tune | Tuning of the bandwidth parameter in the von Mises kernel for circular data
vmnb.pred | Prediction with some naive Bayes classifiers for circular data

## -- W --

watson | Uniformity tests for circular data.
wood.mle | MLE of the Wood bimodal distribution on the sphere
worldmap | maps of the world and the continents
wrapcauchy.mle | MLE of some circular distributions
wrapnormal.mle | MLE of some circular distributions