.assignParentValue      Assign parent values based on component type
.computeTranspose       Compute the transpose multiplication for the
                        relatedness matrix
.loadOrComputeIsChild   Load or compute the isChild matrix
.postProcessGedcom.legacy
                        Post-process GEDCOM Data Frame
ASOIAF                  A pedigree of ice and fire
addParentRow            Create a properly formatted parent row for the
                        pedigree
addPersonToPed          addPersonToTree A function to add a new person
                        to an existing pedigree 'data.frame'.
addRowlessParents       Add addRowlessParents
applyTagMappings        Apply Tag Mappings to a Line
buildBetweenGenerations
                        Process Generation Connections
buildWithinGenerations
                        Process Generations for Pedigree Simulation
calcAllGens             calcAllGens A function to calculate the number
                        of individuals in each generation. This is a
                        supporting function for 'simulatePedigree'.
calcFamilySize          calcFamilySize A function to calculate the
                        total number of individuals in a pedigree given
                        parameters. This is a supporting function for
                        function 'simulatePedigree'
calcFamilySizeByGen     calcFamilySizeByGen An internal supporting
                        function for 'simulatePedigree'.
calculateCIs            Calculate Confidence Intervals for Correlation
                        Coefficients
calculateH              Falconer's Formula
calculateRelatedness    Calculate Relatedness Coefficient
checkIDs                Validates and Optionally Repairs Unique IDs in
                        a Pedigree Dataframe
checkIDuniqueness       Check for duplicated individual IDs
checkParentIDs          Validates and Optionally Repairs Parent IDs in
                        a Pedigree Dataframe
checkParentSex          Check Parental Role Sex Consistency
checkPedigreeNetwork    Validate Pedigree Network Structure
checkSex                Validates and Optionally Repairs Sex Coding in
                        a Pedigree Dataframe
checkWithinRowDuplicates
                        Check for within-row duplicates (self-parents,
                        same mom/dad)
collapseNames           collapse Names
com2links               Convert Sparse Relationship Matrices to Kinship
                        Links
comp2vech               comp2vech Turn a variance component relatedness
                        matrix into its half-vectorization
computeParentAdjacency
                        Compute Parent Adjacency Matrix with Multiple
                        Approaches
countPatternRows        Count GEDCOM Pattern Rows
createGenDataFrame      Create Data Frame for Generation
determineSex            Determine Sex of Offspring
dropLink                dropLink A function to drop a person from
                        his/her parents in the simulated pedigree
                        'data.frame'. The person can be dropped by
                        specifying his/her ID or by specifying the
                        generation which the randomly to-be-dropped
                        person is in. The function can separate one
                        pedigree into two pedigrees. Separating into
                        small pieces should be done by running the
                        function multiple times. This is a
                        supplementary function for 'simulatePedigree'.
findBiggest             This function finds the biggest families in a
                        pedigree. It is supposed to be used internally
                        by the 'summarize_pedigree' function.
findOldest              This function finds the oldest families in a
                        pedigree. It is supposed to be used internally
                        by the 'summarize_pedigree' function.
fitComponentModel       fitComponentModel Fit the estimated variance
                        components of a model to covariance data
hazard                  Simulated pedigree with two extended families
                        and an age-related hazard
identifyComponentModel
                        identifyComponentModel Determine if a variance
                        components model is identified
inbreeding              Artificial pedigree data on eight families with
                        inbreeding
initializeRecord        Initialize an Empty Individual Record
insertEven              evenInsert A function to insert m elements
                        evenly into a length n vector.
isChild                 Determine isChild Status, isChild is the 'S'
                        matrix from RAM
makeInbreeding          makeInbreeding A function to create inbred
                        mates in the simulated pedigree 'data.frame'.
                        Inbred mates can be created by specifying their
                        IDs or the generation the inbred mate should be
                        created. When specifying the generation,
                        inbreeding between siblings or 1st cousin needs
                        to be specified. This is a supplementary
                        function for 'simulatePedigree'.
makeTwins               makeTwins A function to impute twins in the
                        simulated pedigree 'data.frame'. Twins can be
                        imputed by specifying their IDs or by
                        specifying the generation the twin should be
                        imputed. This is a supplementary function for
                        'simulatePedigree'.
mapFAMS2parents         Create a Mapping from Family IDs to Parent IDs
markPotentialChildren   Mark and Assign children
parseNameLine           Parse a Full Name Line
ped2add                 Take a pedigree and turn it into an additive
                        genetics relatedness matrix
ped2ce                  Take a pedigree and turn it into an extended
                        environmental relatedness matrix
ped2cn                  Take a pedigree and turn it into a common
                        nuclear environmental relatedness matrix
ped2com                 Take a pedigree and turn it into a relatedness
                        matrix
ped2fam                 Segment Pedigree into Extended Families
ped2graph               Turn a pedigree into a graph
ped2maternal            Add a maternal line ID variable to a pedigree
ped2mit                 Take a pedigree and turn it into a
                        mitochondrial relatedness matrix
ped2paternal            Add a paternal line ID variable to a pedigree
postProcessGedcom       Post-process GEDCOM Data Frame
potter                  Fictional pedigree data on a wizarding family
processEventLine        Process Event Lines (Birth or Death)
processParents          Process Parents Information from GEDCOM Data
readGedcom              Read a GEDCOM File
readWikifamilytree      Read Wiki Family Tree
recodeSex               Recodes Sex Variable in a Pedigree Dataframe
repairIDs               Repair Missing IDs
repairParentIDs         Repair Parent IDs
repairSex               Repairs Sex Coding in a Pedigree Dataframe
resample                Resample Elements of a Vector
royal92                 Royal pedigree data from 1992
simulatePedigree        Simulate Pedigrees This function simulates
                        "balanced" pedigrees based on a group of
                        parameters: 1) k - Kids per couple; 2) G -
                        Number of generations; 3) p - Proportion of
                        males in offspring; 4) r - Mating rate.
splitIndividuals        Split GEDCOM Lines into Individual Blocks
standardizeColnames     Standardize Column Names in a Dataframe
                        (Internal)
summarizeFamilies       Summarize the families in a pedigree
summarizeMatrilines     Summarize the maternal lines in a pedigree
summarizePatrilines     Summarize the paternal lines in a pedigree
summarizePedigrees      Summarize Pedigree Data
traceTreePaths          Trace paths between individuals in a family
                        tree grid
validate_and_convert_matrix
                        validate_and_convert_matrix
vech                    vech Create the half-vectorization of a matrix
