# Generated by roxygen2: do not edit by hand

export(EstParam)
export(SRTsim_shiny)
export(Shiny2SRT)
export(compareSRT)
export(convert_grid)
export(createSRT)
export(metaParam)
export(reGenCountshiny)
export(refCounts)
export(refcolData)
export(refrowData)
export(simCounts)
export(simNewLocs)
export(simcolData)
export(simrowData)
export(srtsim_cci_free)
export(srtsim_cci_ref)
export(srtsim_count)
export(srtsim_count_affine)
export(srtsim_fit)
export(srtsim_newlocs)
export(subsetSRT)
export(visualize_gene)
export(visualize_metrics)
import(ggplot2)
import(shiny)
import(shinydashboard)
importClassesFrom(Matrix,dgCMatrix)
importClassesFrom(S4Vectors,DataFrame)
importClassesFrom(S4Vectors,SimpleList)
importFrom(FNN,get.knn)
importFrom(MASS,glm.nb)
importFrom(Matrix,colMeans)
importFrom(Matrix,colSums)
importFrom(Matrix,rowMeans)
importFrom(Matrix,rowSums)
importFrom(Morpho,applyTransform)
importFrom(Morpho,computeTransform)
importFrom(S4Vectors,DataFrame)
importFrom(S4Vectors,SimpleList)
importFrom(S4Vectors,coolcat)
importFrom(concaveman,concaveman)
importFrom(dashboardthemes,shinyDashboardThemeDIY)
importFrom(dplyr,case_when)
importFrom(dplyr,mutate)
importFrom(ggplot2,theme_bw)
importFrom(ggplot2,theme_set)
importFrom(ggpubr,ggarrange)
importFrom(magrittr,"%<>%")
importFrom(magrittr,"%>%")
importFrom(matrixStats,rowMedians)
importFrom(methods,as)
importFrom(methods,new)
importFrom(parallel,mclapply)
importFrom(pdist,pdist)
importFrom(plotly,event_data)
importFrom(plotly,ggplotly)
importFrom(plotly,layout)
importFrom(plotly,plotlyOutput)
importFrom(plotly,renderPlotly)
importFrom(sf,st_as_sf)
importFrom(sf,st_bbox)
importFrom(sf,st_coordinates)
importFrom(sf,st_intersection)
importFrom(sf,st_make_grid)
importFrom(shiny,column)
importFrom(shiny,fluidRow)
importFrom(shiny,runApp)
importFrom(shiny,shinyApp)
importFrom(shinyBS,bsModal)
importFrom(shinydashboard,dashboardSidebar)
importFrom(shinydashboard,menuItem)
importFrom(shinydashboard,sidebarMenu)
importFrom(sp,Polygon)
importFrom(sp,spsample)
importFrom(spatstat.geom,area)
importFrom(spatstat.geom,disc)
importFrom(spatstat.geom,owin)
importFrom(spatstat.random,rpoispp)
importFrom(stats,aggregate)
importFrom(stats,logLik)
importFrom(stats,na.omit)
importFrom(stats,optim)
importFrom(stats,pchisq)
importFrom(stats,rbinom)
importFrom(stats,rnbinom)
importFrom(utils,globalVariables)
importFrom(utils,read.csv)
importFrom(utils,write.csv)
importFrom(viridis,scale_color_viridis)
