SIMplyBee-package	SIMplyBee-package
addCastePop	addCastePop
addDrones	addCastePop
addVirginQueens	addCastePop
addWorkers	addCastePop
areDronesPresent	isWorkersPresent
areFathersPresent	isFathersPresent
areVirginQueensPresent	isVirginQueensPresent
areWorkersPresent	isWorkersPresent
buildUp	buildUp
c,ColonyOrNULL-method	Colony-class
c,MultiColony-method	MultiColony-class
c,MultiColonyOrNULL-method	MultiColony-class
c,NULLOrPop-method	combineNULLAndPop
calcBeeAlleleFreq	calcBeeGRMIbs
calcBeeGRMIbd	calcBeeGRMIbd
calcBeeGRMIbs	calcBeeGRMIbs
calcColonyAa	calcColonyValue
calcColonyBv	calcColonyValue
calcColonyDd	calcColonyValue
calcColonyGv	calcColonyValue
calcColonyPheno	calcColonyValue
calcColonyValue	calcColonyValue
calcInheritanceCriterion	calcInheritanceCriterion
calcPerformanceCriterion	calcPerformanceCriterion
calcQueensPHomBrood	calcQueensPHomBrood
calcSelectionCriterion	calcSelectionCriterion
collapse	collapse
Colony-class	Colony-class
combine	combine
combineBeeGametes	combineBeeGametes
combineBeeGametesHaploDiploid	combineBeeGametesHaploDiploid
createCastePop	createCastePop
createColony	createColony
createDCA	createDCA
createDrones	createCastePop
createMatingStationDCA	createMatingStationDCA
createMultiColony	createMultiColony
createRandomCrossPlan	createRandomCrossPlan
createVirginQueens	createCastePop
createWorkers	createCastePop
cross	cross
downsize	downsize
downsizePUnif	downsizePFun
editCsdLocus	editCsdLocus
getAa	getAa
getBv	getBv
getCaste	getCaste
getCasteId	getCasteId
getCastePop	getCastePop
getCasteSex	getCasteSex
getCsdAlleles	getCsdAlleles
getCsdGeno	getCsdGeno
getDd	getDd
getDrones	getCastePop
getDronesAa	getAa
getDronesBv	getBv
getDronesCsdAlleles	getCsdAlleles
getDronesCsdGeno	getCsdGeno
getDronesDd	getDd
getDronesGv	getGv
getDronesIbdHaplo	getIbdHaplo
getDronesPheno	getPheno
getDronesQtlGeno	getQtlGeno
getDronesQtlHaplo	getQtlHaplo
getDronesSegSiteGeno	getSegSiteGeno
getDronesSegSiteHaplo	getSegSiteHaplo
getDronesSnpGeno	getSnpGeno
getDronesSnpHaplo	getSnpHaplo
getEvents	getEvents
getFathers	getCastePop
getFathersAa	getAa
getFathersBv	getBv
getFathersCsdAlleles	getCsdAlleles
getFathersCsdGeno	getCsdGeno
getFathersDd	getDd
getFathersGv	getGv
getFathersIbdHaplo	getIbdHaplo
getFathersPheno	getPheno
getFathersQtlGeno	getQtlGeno
getFathersQtlHaplo	getQtlHaplo
getFathersSegSiteGeno	getSegSiteGeno
getFathersSegSiteHaplo	getSegSiteHaplo
getFathersSnpGeno	getSnpGeno
getFathersSnpHaplo	getSnpHaplo
getGv	getGv
getIbdHaplo	getIbdHaplo
getId	getId
getLocation	getLocation
getPheno	getPheno
getPooledGeno	getPooledGeno
getQtlGeno	getQtlGeno
getQtlHaplo	getQtlHaplo
getQueen	getCastePop
getQueenAa	getAa
getQueenAge	getQueenAge
getQueenBv	getBv
getQueenCsdAlleles	getCsdAlleles
getQueenCsdGeno	getCsdGeno
getQueenDd	getDd
getQueenGv	getGv
getQueenIbdHaplo	getIbdHaplo
getQueenPheno	getPheno
getQueenQtlGeno	getQtlGeno
getQueenQtlHaplo	getQtlHaplo
getQueenSegSiteGeno	getSegSiteGeno
getQueenSegSiteHaplo	getSegSiteHaplo
getQueenSnpGeno	getSnpGeno
getQueenSnpHaplo	getSnpHaplo
getQueenYearOfBirth	getQueenYearOfBirth
getSegSiteGeno	getSegSiteGeno
getSegSiteHaplo	getSegSiteHaplo
getSnpGeno	getSnpGeno
getSnpHaplo	getSnpHaplo
getVirginQueens	getCastePop
getVirginQueensAa	getAa
getVirginQueensBv	getBv
getVirginQueensCsdAlleles	getCsdAlleles
getVirginQueensCsdGeno	getCsdGeno
getVirginQueensDd	getDd
getVirginQueensGv	getGv
getVirginQueensIbdHaplo	getIbdHaplo
getVirginQueensPheno	getPheno
getVirginQueensQtlGeno	getQtlGeno
getVirginQueensQtlHaplo	getQtlHaplo
getVirginQueensSegSiteGeno	getSegSiteGeno
getVirginQueensSegSiteHaplo	getSegSiteHaplo
getVirginQueensSnpGeno	getSnpGeno
getVirginQueensSnpHaplo	getSnpHaplo
getWorkers	getCastePop
getWorkersAa	getAa
getWorkersBv	getBv
getWorkersCsdAlleles	getCsdAlleles
getWorkersCsdGeno	getCsdGeno
getWorkersDd	getDd
getWorkersGv	getGv
getWorkersIbdHaplo	getIbdHaplo
getWorkersPheno	getPheno
getWorkersQtlGeno	getQtlGeno
getWorkersQtlHaplo	getQtlHaplo
getWorkersSegSiteGeno	getSegSiteGeno
getWorkersSegSiteHaplo	getSegSiteHaplo
getWorkersSnpGeno	getSnpGeno
getWorkersSnpHaplo	getSnpHaplo
hasCollapsed	hasCollapsed
hasSplit	hasSplit
hasSuperseded	hasSuperseded
hasSwarmed	hasSwarmed
isCaste	isCaste
isColony	Colony-class
isCsdActive	isCsdActive
isCsdHeterozygous	isCsdHeterozygous
isDrone	isCaste
isDronesPresent	isDronesPresent
isEmpty	isEmpty
isFather	isCaste
isFathersPresent	isFathersPresent
isGenoHeterozygous	isGenoHeterozygous
isMultiColony	MultiColony-class
isNULLColonies	isNULLColonies
isProductive	isProductive
isQueen	isCaste
isQueenPresent	isQueenPresent
isSimParamBee	isSimParamBee
isVirginQueen	isCaste
isVirginQueensPresent	isVirginQueensPresent
isWorker	isCaste
isWorkersPresent	isWorkersPresent
mapCasteToColonyAa	mapCasteToColonyValue
mapCasteToColonyBv	mapCasteToColonyValue
mapCasteToColonyDd	mapCasteToColonyValue
mapCasteToColonyGv	mapCasteToColonyValue
mapCasteToColonyPheno	mapCasteToColonyValue
mapCasteToColonyValue	mapCasteToColonyValue
MultiColony-class	MultiColony-class
nCaste	nCaste
nColonies	nColonies
nCsdAlleles	nCsdAlleles
nDrones	nCaste
nDronesColonyPhenotype	nDronesFun
nDronesPoisson	nDronesFun
nDronesTruncPoisson	nDronesFun
nEmptyColonies	nColonies
nFathers	nCaste
nFathersPoisson	nFathersFun
nFathersTruncPoisson	nFathersFun
nHomBrood	calcQueensPHomBrood
nNULLColonies	nColonies
nQueens	nCaste
nVirginQueens	nCaste
nVirginQueensColonyPhenotype	nVirginQueensFun
nVirginQueensPoisson	nVirginQueensFun
nVirginQueensTruncPoisson	nVirginQueensFun
nWorkers	nCaste
nWorkersColonyPhenotype	nWorkersFun
nWorkersPoisson	nWorkersFun
nWorkersTruncPoisson	nWorkersFun
pHomBrood	calcQueensPHomBrood
pullCastePop	pullCastePop
pullColonies	pullColonies
pullDroneGroupsFromDCA	pullDroneGroupsFromDCA
pullDrones	pullCastePop
pullInd	pullInd
pullQueen	pullCastePop
pullVirginQueens	pullCastePop
pullWorkers	pullCastePop
reduceDroneGeno	reduceDroneGeno
reduceDroneHaplo	reduceDroneHaplo
removeCastePop	removeCastePop
removeColonies	removeColonies
removeDrones	removeCastePop
removeQueen	removeCastePop
removeVirginQueens	removeCastePop
removeWorkers	removeCastePop
replaceCastePop	replaceCastePop
replaceDrones	replaceCastePop
replaceVirginQueens	replaceCastePop
replaceWorkers	replaceCastePop
reQueen	reQueen
resetEvents	resetEvents
selectColonies	selectColonies
setLocation	setLocation
setQueensYearOfBirth	setQueensYearOfBirth
show,Colony-method	Colony-class
show,MultiColony-method	MultiColony-class
SimParamBee	SimParamBee
SIMplyBee	SIMplyBee-package
simulateHoneyBeeGenomes	simulateHoneyBeeGenomes
split	split
splitPColonyStrength	splitPFun
splitPUnif	splitPFun
supersede	supersede
swarm	swarm
swarmPUnif	swarmPFun
[,MultiColony,character-method	MultiColony-class
[,MultiColony,integerOrNumericOrLogical-method	MultiColony-class
[<-,MultiColony,integerOrNumericOrLogicalOrCharacter,ANY,MultiColony-method	MultiColony-class
[[,MultiColony,character-method	MultiColony-class
[[,MultiColony,integerOrNumericOrLogical-method	MultiColony-class
[[<-,MultiColony,integerOrNumericOrLogicalOrCharacter,ANY,Colony-method	MultiColony-class
