Package: RTIGER
Type: Package
Title: HMM-Based Model for Genotyping and Cross-Over Identification
Version: 2.1.0
Authors@R: c(
    person("Rafael", "Campos-Martin", email = "rfael.mpi@gmail.com", role = c("cre"), comment = c(ORCID = "0000-0002-1395-8571")),
    person("Sophia", "Schmickler", email = "so4a_schmickler@t-online.de", role = c("aut")),
    person("Manish", "Goel", email = "goel@mpipz.mpg.de", role = c("ctb")),
    person("Korbinian", "Schneeberger", email = "schneeberger@mpipz.mpg.de", role = c("aut")),
    person("Achim", "Tresch", email = "achim.tresch@uni-koeln.de", role= c("aut"))
    )
Description: Our method integrates information from all sequenced samples, thus avoiding loss of alleles due to low coverage. Moreover, it increases the statistical power to uncover sequencing or alignment errors <doi:10.1093/plphys/kiad191>. 
Depends: R (>= 3.6), GenomicRanges, GenomeInfoDb
License: GPL (>= 2)
Encoding: UTF-8
LazyData: true
LazyDataCompression: gzip
Imports: methods, e1071, extraDistr, reshape2, ggplot2, TailRank,
        JuliaCall, IRanges, qpdf, grDevices, graphics, stats, utils
RoxygenNote: 7.2.3
VignetteBuilder: knitr
Suggests: knitr, rmarkdown, markdown, Gviz, rtracklayer
biocViews: GenomeAnnotation, HiddenMarkovModel, Sequencing
NeedsCompilation: no
Packaged: 2023-03-29 08:50:35 UTC; campos
Author: Rafael Campos-Martin [cre] (<https://orcid.org/0000-0002-1395-8571>),
  Sophia Schmickler [aut],
  Manish Goel [ctb],
  Korbinian Schneeberger [aut],
  Achim Tresch [aut]
Maintainer: Rafael Campos-Martin <rfael.mpi@gmail.com>
Repository: CRAN
Date/Publication: 2023-03-29 09:20:02 UTC
Built: R 4.2.0; ; 2023-07-11 01:36:04 UTC; unix
