R: Tools for Mapping of Quantitative Traits of Genetically Related Individuals and Calculating Identity Coefficients from Pedigrees

# Tools for Mapping of Quantitative Traits of Genetically Related Individuals and Calculating Identity Coefficients from Pedigrees

## Documentation for package ‘QTLRel’ version 1.14

- DESCRIPTION file.
- User guides, package vignettes and other documentation.

## Help Pages

aicVC | AIC Model Selection
blup | Best Linear Unbiased Prediction
cic | Calculate Jacquard condensed identity coefficients
eigen.sym | Spectral decomposition of a matrix
estVC | Estimate Variance Component Parameters
fv | A collection of other functions.
gdatF8 | Genotype data, phenotype data, genetic map and pedigree.
genMatrix | Derive genetic matrices
genoImpute | Impute Genotypic Data
genoPos | A collection of other functions.
genoProb | Probability of a Genotype.
genoSim | Generate Genotypic Data
gls | Generalized Least Squares Estimates
gmapF8 | Genotype data, phenotype data, genetic map and pedigree.
gmF8 | Genotype data, phenotype data, genetic map and pedigree.
gvar | A collection of other functions.
hapSim | Generate Genotypic Data
ibs | Estimate Jacquard condensed identity coefficients
kinship | Calculate kinship coefficients
lodci | Estimate LOD Support Intervals
mAIC | Multiple QTL AIC
mAIC.HK | Multiple QTL AIC
miscEx | Genotype data, phenotype data, genetic map and pedigree.
nullSim | Simulate null distribution
pdatF8 | Genotype data, phenotype data, genetic map and pedigree.
pedF8 | Genotype data, phenotype data, genetic map and pedigree.
pedF8.1 | Genotype data, phenotype data, genetic map and pedigree.
pedF8.2 | Genotype data, phenotype data, genetic map and pedigree.
pedRecode | Recode a Pedigree
pkolm | A collection of other functions.
plot | Plotting
plot.scanOne | Plotting
plot.scanTwo | Plotting
plotit | Plotting
qkolm | A collection of other functions.
qqPlot | Quantile-Quantile Plots
qtl2rel | Convert data from R/qtl to QTLRel format
qtlVar | QTL Variance
rel2qtl | Convert data from QTLRel to R/qtl format
rem | Random effect matrices
scanOne | Genome Scan for QTL
scanTwo | Genome Scan for Epistasis