# Generated by roxygen2: do not edit by hand

export(AnnoVolcanoPlot)
export(AnnotateGenes.10x)
export(AnnotateSJ.10x)
export(AssignModality)
export(BioPathways)
export(BioPathways.10x)
export(BioPathways.Plot)
export(BioPathways.Plot.10x)
export(CheckAlignment)
export(CheckAlignment.10x)
export(CheckAlignment.Exp)
export(CheckAlignment.PSI)
export(CheckAlignment.PSI.Exp)
export(CheckAlignment.SJ)
export(CompareExpr)
export(CompareValues)
export(CompareValues.Exp)
export(CompareValues.Exp.Spliced)
export(CompareValues.Genes.10x)
export(CompareValues.PSI)
export(CompareValues.SJ.10x)
export(ComputePSI)
export(ComputePSI.A3SS)
export(ComputePSI.A5SS)
export(ComputePSI.AFE)
export(ComputePSI.ALE)
export(ComputePSI.MXE)
export(ComputePSI.RI)
export(ComputePSI.SE)
export(CountEvents)
export(CreateMarvelObject)
export(CreateMarvelObject.10x)
export(DetectEvents)
export(DetectEvents.AFE)
export(DetectEvents.AFE.NegStrand)
export(DetectEvents.AFE.PosStrand)
export(DetectEvents.ALE)
export(DetectEvents.ALE.NegStrand)
export(DetectEvents.ALE.PosStrand)
export(FilterGenes.10x)
export(FindPTC)
export(FindPTC.A3SS.NegStrand)
export(FindPTC.A3SS.PosStrand)
export(FindPTC.A5SS.NegStrand)
export(FindPTC.A5SS.PosStrand)
export(FindPTC.RI.NegStrand)
export(FindPTC.RI.PosStrand)
export(FindPTC.SE.NegStrand)
export(FindPTC.SE.PosStrand)
export(IsoSwitch)
export(IsoSwitch.10x)
export(IsoSwitch.PlotExpr)
export(ModalityChange)
export(ParseGTF)
export(PctASE)
export(PlotDEValues)
export(PlotDEValues.Exp.Global)
export(PlotDEValues.Exp.Spliced)
export(PlotDEValues.Genes.10x)
export(PlotDEValues.PSI.Distance)
export(PlotDEValues.PSI.Mean)
export(PlotDEValues.PSI.Mean.g2vsg1)
export(PlotDEValues.SJ.10x)
export(PlotPctExprCells.Genes.10x)
export(PlotPctExprCells.SJ.10x)
export(PlotValues)
export(PlotValues.Exp)
export(PlotValues.PCA.CellGroup.10x)
export(PlotValues.PCA.Gene.10x)
export(PlotValues.PCA.PSI.10x)
export(PlotValues.PSI)
export(PropModality)
export(PropModality.Bar)
export(PropModality.Doughnut)
export(PropPTC)
export(RunPCA)
export(RunPCA.Exp)
export(RunPCA.PSI)
export(SubsetCrypticA3SS)
export(SubsetSamples)
export(TransformExpValues)
export(ValidateSJ.10x)
export(adhocGene.DE.Gene.10x)
export(adhocGene.DE.PSI.10x)
export(adhocGene.PlotDEValues.10x)
export(adhocGene.PlotSJPosition.10x)
export(adhocGene.TabulateExpression.Gene.10x)
export(adhocGene.TabulateExpression.PSI.10x)
import(Matrix)
import(ggplot2)
import(methods)
import(scales)
importFrom(grDevices,hcl)
importFrom(plyr,join)
importFrom(stats,aggregate)
importFrom(stats,chisq.test)
importFrom(stats,fisher.test)
importFrom(stats,ks.test)
importFrom(stats,na.omit)
importFrom(stats,p.adjust)
importFrom(stats,p.adjust.methods)
importFrom(stats,rnorm)
importFrom(stats,runif)
importFrom(stats,sd)
importFrom(stats,t.test)
importFrom(stats,var)
importFrom(stats,wilcox.test)
importFrom(utils,setTxtProgressBar)
importFrom(utils,txtProgressBar)
