R: Testing Hypotheses About the Microbiome using the Linear Decomposition Model

# Testing Hypotheses About the Microbiome using the Linear Decomposition Model

## Documentation for package ‘LDM’ version 6.0.1

- DESCRIPTION file.
- User guides, package vignettes and other documentation.

## Help Pages

adjust.data.by.covariates | Adjusting data (distance matrix and OTU table) by covariates
avgdist.squared | Averaging the squared distance matrices each calculated from a rarefied OTU table
jaccard.mean | Expected value of the Jaccard distance matrix
ldm | Testing hypotheses about the microbiome using a linear decomposition model (LDM)
permanovaFL | PERMANOVA test of association based on the Freedman-Lane permutation scheme
sim.meta | Metadata of the simulated microbiome samples
sim.otu.tab | OTU count table of the simulated microbiome samples
sim.otu.tab5 | Filtered OTU count table of the simulated microbiome samples
throat.meta | Metadata of the throat microbiome samples
throat.otu.tab | OTU count table from 16S sequencing of the throat microbiome samples
throat.otu.tab5 | Filtered OTU count table from 16S sequencing of the throat microbiome samples
throat.tree | UPGMA tree of the OTUs from 16S sequencing of the throat microbiome samples
unifrac.mean | Expected value of the unweighted UniFrac distance matrix