R: Landscape Construction and Simulation for Ising Networks

# Landscape Construction and Simulation for Ising Networks

## Documentation for package ‘Isinglandr’ version 0.1.1

- DESCRIPTION file.

## Help Pages

all_thresholds | Control Functions to Specify the Varying Parameters for an Ising Grid.
autolayer.resilience | Get ggplot2 layers of resilience metrics to add to the landscape plots
autolayer.resilience_2d_Isingland | Get ggplot2 layers of resilience metrics to add to the landscape plots
beta_list | Control Functions to Specify the Varying Parameters for an Ising Grid.
calculate_barrier.2d_Isingland | Calculate energy barrier for Ising landscapes
calculate_barrier.2d_Isingland_matrix | Calculate energy barrier for Ising landscapes
calculate_barrier.Isingland | Calculate energy barrier for Ising landscapes
calculate_resilience | Calculate the resilience values for Ising landscapes
calculate_resilience.2d_Isingland | Calculate the resilience values for Ising landscapes
calculate_resilience.2d_Isingland_matrix | Calculate the resilience values for Ising landscapes
chain_simulate_Isingland | Make Ising chains from (a series of) Ising grid(s) and perform a chain simulation.
make_2d_Isingland | Make a 2D landscape for an Ising network
make_2d_Isingland_matrix | Make a matrix of landscapes for multiple Ising networks
make_3d_Isingland | Make a 3D landscape for an Ising network
make_Ising_chain | Make Ising chains from (a series of) Ising grid(s) and perform a chain simulation.
make_Ising_grid | Make a Grid to Specify Multiple Ising Networks
make_Ising_grid-control-functions | Control Functions to Specify the Varying Parameters for an Ising Grid.
MDDConnectivity | Estimation data for the Ising network of major depressive disorder
MDDNetwork | Estimation data for the Ising network of major depressive disorder
MDDThresholds | Estimation data for the Ising network of major depressive disorder
print.barrier_2d_Isingland | Calculate energy barrier for Ising landscapes
shiny_Isingland_MDD | A shiny app that shows the landscape for the Ising network of major depressive disorder
simulate_Isingland | Simulate a 2D Ising landscape
simulate_Isingland.2d_Isingland | Simulate a 2D Ising landscape
simulate_Isingland.2d_Isingland_matrix | Simulate a 2D Ising landscape
single_threshold | Control Functions to Specify the Varying Parameters for an Ising Grid.
single_wei | Control Functions to Specify the Varying Parameters for an Ising Grid.
summary.barrier_2d_Isingland | Calculate energy barrier for Ising landscapes
summary.barrier_2d_Isingland_matrix | Calculate energy barrier for Ising landscapes
whole_weiadj | Control Functions to Specify the Varying Parameters for an Ising Grid.