tmod: Feature Set Enrichment Analysis for Metabolomics and Transcriptomics
Methods and feature set definitions for feature or gene set enrichment analysis in transcriptional and metabolic profiling data. Package includes tests for enrichment based on ranked lists of features, functions for visualisation and multivariate functional analysis. See Zyla et al (2019) <doi:10.1093/bioinformatics/btz447>.
| Version: | 0.50.13 |
| Depends: | R (≥ 2.10) |
| Imports: | beeswarm, tagcloud, XML, methods, plotwidgets, RColorBrewer, gplots, tibble, pheatmap, ggplot2, tidyr, purrr, rlang, tidyselect, ggrepel |
| Suggests: | testthat, knitr, rmarkdown, dplyr, pander, cowplot |
| Published: | 2023-03-31 |
| DOI: | 10.32614/CRAN.package.tmod |
| Author: | January Weiner 
[aut, cre] |
| Maintainer: | January Weiner <january.weiner at gmail.com> |
| License: | GPL-2 | GPL-3 [expanded from: GPL (≥ 2.0)] |
| URL: | https://tmod.online, https://github.com/january3/tmod/, https://january3.github.io/tmod/ |
| NeedsCompilation: | no |
| Citation: | tmod citation info |
| Materials: | README ChangeLog |
| In views: | Omics |
| CRAN checks: | tmod results |
Documentation:
| Reference manual: | tmod.pdf |
| Vignettes: |
tmod: Analysis of Gene Set Enrichments |
Downloads:
| Package source: | tmod_0.50.13.tar.gz |
| Windows binaries: | r-devel: tmod_0.50.13.zip, r-release: tmod_0.50.13.zip, r-oldrel: tmod_0.50.13.zip |
| macOS binaries: | r-devel (arm64): tmod_0.50.13.tgz, r-release (arm64): tmod_0.50.13.tgz, r-oldrel (arm64): tmod_0.50.13.tgz, r-devel (x86_64): tmod_0.50.13.tgz, r-release (x86_64): tmod_0.50.13.tgz, r-oldrel (x86_64): tmod_0.50.13.tgz |
| Old sources: | tmod archive |
Reverse dependencies:
| Reverse imports: | GeneSelectR |
Linking:
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