symphony: Efficient and Precise Single-Cell Reference Atlas Mapping
Implements the Symphony single-cell reference building and query mapping algorithms and additional functions described in Kang et al <https://www.nature.com/articles/s41467-021-25957-x>.
| Version: | 0.1.1 |
| Depends: | R (≥ 3.5) |
| Imports: | methods, Rcpp, harmony, uwot, irlba, class, purrr, dplyr, ggplot2, stats, utils, magrittr, data.table, tibble, Matrix, tidyr, rlang, RColorBrewer, RANN |
| LinkingTo: | Rcpp, RcppArmadillo |
| Suggests: | knitr, rmarkdown, testthat, ggthemes, ggrastr, ggrepel |
| Published: | 2023-01-16 |
| DOI: | 10.32614/CRAN.package.symphony |
| Author: | Joyce Kang  [aut,
cre],
Ilya Korsunsky
[aut],
Soumya Raychaudhuri
[aut] |
| Maintainer: | Joyce Kang <joyce_kang at hms.harvard.edu> |
| License: | GPL (≥ 3) |
| NeedsCompilation: | yes |
| Materials: | README |
| CRAN checks: | symphony results [issues need fixing before 2025-11-15] |
Documentation:
| Reference manual: | symphony.html , symphony.pdf |
| Vignettes: |
Quickstart PBMCs Tutorial (source, R code) |
Downloads:
| Package source: | symphony_0.1.1.tar.gz |
| Windows binaries: | r-devel: symphony_0.1.1.zip, r-release: symphony_0.1.1.zip, r-oldrel: symphony_0.1.1.zip |
| macOS binaries: | r-release (arm64): symphony_0.1.1.tgz, r-oldrel (arm64): symphony_0.1.1.tgz, r-release (x86_64): symphony_0.1.1.tgz, r-oldrel (x86_64): symphony_0.1.1.tgz |
| Old sources: | symphony archive |
Linking:
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