ribd: Pedigree-based Relatedness Coefficients
Recursive algorithms for computing various relatedness
coefficients, including pairwise kinship, kappa and identity
coefficients. Both autosomal and X-linked coefficients are computed.
Founders are allowed to be inbred, which enables construction of any
given kappa coefficients, as described in Vigeland (2020)
<doi:10.1007/s00285-020-01505-x>. In addition to the standard
coefficients, 'ribd' also computes a range of lesser-known
coefficients, including generalised kinship coefficients, multi-person
coefficients and two-locus coefficients (Vigeland, 2023,
<doi:10.1093/g3journal/jkac326>). Many features of 'ribd' are
available through the online app 'QuickPed' at
<https://magnusdv.shinyapps.io/quickped>; see Vigeland (2022)
<doi:10.1186/s12859-022-04759-y>.
| Version: |
1.7.1 |
| Depends: |
pedtools (≥ 2.6.0), R (≥ 4.1.0) |
| Imports: |
glue, kinship2, slam |
| Suggests: |
ggplot2, ggrepel, plotly, spelling, testthat |
| Published: |
2025-02-08 |
| DOI: |
10.32614/CRAN.package.ribd |
| Author: |
Magnus Dehli Vigeland
 [aut, cre] |
| Maintainer: |
Magnus Dehli Vigeland <m.d.vigeland at medisin.uio.no> |
| License: |
GPL-3 |
| URL: |
https://github.com/magnusdv/ribd,
https://magnusdv.github.io/pedsuite/ |
| NeedsCompilation: |
no |
| Language: |
en-GB |
| Citation: |
ribd citation info |
| Materials: |
README, NEWS |
| CRAN checks: |
ribd results |
Documentation:
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