protViz: Visualizing and Analyzing Mass Spectrometry Related Data in Proteomics

Helps with quality checks, visualizations and analysis of mass spectrometry data, coming from proteomics experiments. The package is developed, tested and used at the Functional Genomics Center Zurich <https://fgcz.ch>. We use this package mainly for prototyping, teaching, and having fun with proteomics data. But it can also be used to do data analysis for small scale data sets.

Version: 0.7.9
Depends: R (≥ 4.1), methods
Imports: Rcpp (≥ 1.0)
LinkingTo: Rcpp (≥ 1.0)
Suggests: lattice, testthat, xtable
Published: 2023-12-12
DOI: 10.32614/CRAN.package.protViz
Author: Christian Panse ORCID iD [aut, cre], Jonas Grossmann ORCID iD [aut], Simon Barkow-Oesterreicher [ctb]
Maintainer: Christian Panse <cp at fgcz.ethz.ch>
BugReports: https://github.com/cpanse/protViz/issues
License: GPL-3
URL: https://github.com/cpanse/protViz/
NeedsCompilation: yes
Citation: protViz citation info
Materials: README, NEWS
In views: Omics
CRAN checks: protViz results

Documentation:

Reference manual: protViz.html , protViz.pdf
Vignettes: ADP Ribosylated Peptides (source, R code)
Howto find putative ptm marker ion? (source, R code)
protViz package poster (in portrait) (source, R code)
primer - protViz: Visualizing and Analyzing Mass Spectrometry Related Data in Proteomics (source, R code)

Downloads:

Package source: protViz_0.7.9.tar.gz
Windows binaries: r-devel: protViz_0.7.9.zip, r-release: protViz_0.7.9.zip, r-oldrel: protViz_0.7.9.zip
macOS binaries: r-release (arm64): protViz_0.7.9.tgz, r-oldrel (arm64): protViz_0.7.9.tgz, r-release (x86_64): protViz_0.7.9.tgz, r-oldrel (x86_64): protViz_0.7.9.tgz
Old sources: protViz archive

Reverse dependencies:

Reverse depends: NestLink, specL
Reverse suggests: koinar, MsBackendRawFileReader, rawrr, RforProteomics

Linking:

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