Reconstruct birth-year specific probabilities of immune imprinting to influenza A, using the methods of Gostic et al. (2016) <doi:10.1126/science.aag1322>. Plot, save, or export the calculated probabilities for use in your own research. By default, the package calculates subtype-specific imprinting probabilities, but with user-provided frequency data, it is possible to calculate probabilities for arbitrary kinds of primary exposure to influenza A, including primary vaccination and exposure to specific clades, strains, etc.
| Version: | 0.1.1 |
| Depends: | R (≥ 3.5.0) |
| Imports: | dplyr (≥ 1.0.9), tidyr (≥ 1.2.0), cowplot (≥ 1.0.0), ggplot2, tidyselect |
| Suggests: | knitr, rmarkdown, testthat (≥ 3.0.0), devtools |
| Published: | 2022-12-16 |
| DOI: | 10.32614/CRAN.package.imprinting |
| Author: | Katelyn Gostic [aut], Alex Byrnes [ctb, cre] |
| Maintainer: | Alex Byrnes <abyrnes at uchicago.edu> |
| BugReports: | https://github.com/cobeylab/imprinting/issues |
| License: | MIT + file LICENSE |
| URL: | https://cobeylab.github.io/imprinting/ |
| NeedsCompilation: | no |
| CRAN checks: | imprinting results |
| Reference manual: | imprinting.html , imprinting.pdf |
| Vignettes: |
custom-imprinting-types (source, R code) intro-to-imprinting (source, R code) |
| Package source: | imprinting_0.1.1.tar.gz |
| Windows binaries: | r-devel: imprinting_0.1.1.zip, r-release: imprinting_0.1.1.zip, r-oldrel: imprinting_0.1.1.zip |
| macOS binaries: | r-release (arm64): imprinting_0.1.1.tgz, r-oldrel (arm64): imprinting_0.1.1.tgz, r-release (x86_64): imprinting_0.1.1.tgz, r-oldrel (x86_64): imprinting_0.1.1.tgz |
| Old sources: | imprinting archive |
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