| Title: | Dataset for 'GOxploreR' |
| Version: | 1.1.0 |
| Author: | Kalifa Manjang |
| Maintainer: | Kalifa Manjang <kalifamanjang1@gmail.com> |
| Description: | Contains the Gene ontology terms and skeleton for the reduced GO directed acyclic graph (DAG) for the organisms Rat and Mouse. The methods are explicitly discussed in the following article : Manjang et al (2020) <doi:10.1038/s41598-020-73326-3>. |
| License: | GPL-2 |
| Encoding: | UTF-8 |
| LazyData: | true |
| Depends: | R (≥ 2.10) |
| RoxygenNote: | 7.1.1 |
| NeedsCompilation: | no |
| Packaged: | 2020-10-30 09:21:18 UTC; kalifa |
| Repository: | CRAN |
| Date/Publication: | 2020-11-05 09:30:02 UTC |
BP GO-terms reduced GO-DAG for Mouse
Description
A data set with list containing information about the reduced GO-BP dag for Mouse
Usage
BPMouse
Format
A list with 3 objects:
- v
GO-terms in the respective nodes.
- dat.d
Data frame object that shows how the respective nodes are connected.
- df
Sketelon of the reduced GO-dags.
Source
<https://www.nature.com/articles/s41598-020-73326-3>
BP GO-terms reduced GO-DAG for Rat
Description
A data set with list containing information about the reduced GO-BP dag for Rat.
Usage
BPRat
Format
A list with 3 objects:
- v
GO-terms in the respective nodes.
- dat.d
Data frame object that shows how the respective nodes are connected.
- df
Sketelon of the reduced GO-dags.
Source
<https://www.nature.com/articles/s41598-020-73326-3>
CC GO-terms reduced GO-DAG for Mouse
Description
A data set with list containing information about the reduced GO-BP DAG for Mouse.
Usage
CCMouse
Format
A list with 3 objects:
- v
GO-terms in the respective nodes.
- dat.d
Data frame object that shows how the respective nodes are connected.
- df
Sketelon of the reduced GO-dags.
Source
<https://www.nature.com/articles/s41598-020-73326-3>
CC GO-terms reduced GO-DAG for Rat
Description
A data set with list containing information about the reduced GO-BP DAG for Rat.
Usage
CCRat
Format
A list with 3 objects:
- v
GO-terms in the respective nodes.
- dat.d
Data frame object that shows how the respective nodes are connected.
- df
Sketelon of the reduced GO-dags.
Source
<https://www.nature.com/articles/s41598-020-73326-3>
MF GO-terms reduced GO-DAG for Mouse
Description
A data set with list containing information about the reduced GO-BP DAG for Mouse.
Usage
MFMouse
Format
A list with 3 objects:
- v
GO-terms in the respective nodes.
- dat.d
Data frame object that shows how the respective nodes are connected.
- df
Sketelon of the reduced GO-dags.
Source
<https://www.nature.com/articles/s41598-020-73326-3>
MF GO-terms reduced GO-DAG for Rat
Description
A data set with list containing information about the reduced GO-BP DAG for Rat
Usage
MFRat
Format
A list with 3 objects:
- v
GO-terms in the respective nodes.
- dat.d
Data frame object that shows how the respective nodes are connected.
- df
Sketelon of the reduced GO-dags.
Source
<https://www.nature.com/articles/s41598-020-73326-3>
BP GO-terms as an Edgelist for Mouse
Description
A data set containing BP, MF and CC GO-terms as an edgelist for Mouse.
Usage
Mouse
Format
A list containing 3 objects:
- BPlist
BP GO-terms edgelist.
- MFlist
MF GO-terms edgelist.
- CClist
CC GO-terms edgelist.
Source
<https://www.nature.com/articles/s41598-020-73326-3>
All GO-terms for Mouse
Description
A data set with all the GO-terms for Mouse.
Usage
MouseAll
Format
A data frame with 337505 rows and 2 variables:
- entrezgene_id
The entrezgene_id.
- go_id
The respective GO-terms.
Source
<https://www.nature.com/articles/s41598-020-73326-3>
BP GO-terms as an Edgelist for Rat
Description
A data set containing BP, MF and CC GO-terms as an edgelist for Rat
Usage
Rat
Format
A list containing 3 objects:
- BPlist
BP GO-terms edgelist.
- MFlist
MF GO-terms edgelist.
- CClist
CC GO-terms edgelist.
Source
<https://www.nature.com/articles/s41598-020-73326-3>
All GO-terms for Rat
Description
A data set with all the GO-terms for Rat.
Usage
RatAll
Format
A data frame with 262619 rows and 2 variables:
- entrezgene_id
The entrezgene_id.
- go_id
The respective GO-terms.
Source
<https://www.nature.com/articles/s41598-020-73326-3>