Contains an engine for spatially-explicit eco-evolutionary mechanistic models with a modular implementation and several support functions. It allows exploring the consequences of ecological and macroevolutionary processes across realistic or theoretical spatio-temporal landscapes on biodiversity patterns as a general term. Reference: Oskar Hagen, Benjamin Flueck, Fabian Fopp, Juliano S. Cabral, Florian Hartig, Mikael Pontarp, Thiago F. Rangel, Loic Pellissier (2021) "gen3sis: A general engine for eco-evolutionary simulations of the processes that shape Earth's biodiversity" <doi:10.1371/journal.pbio.3001340>.
| Version: | 1.6.0 |
| Depends: | R (≥ 3.5.0) |
| Imports: | Rcpp (≥ 0.12.16), Matrix, methods, utils, raster, gdistance, stringr, tools, grDevices |
| LinkingTo: | Rcpp, BH |
| Suggests: | knitr, markdown, testthat (≥ 3.2.0), rmarkdown, formatR |
| Published: | 2025-09-01 |
| DOI: | 10.32614/CRAN.package.gen3sis |
| Author: | ETH Zürich [cph], Oskar Hagen [aut, cre] (Landscape Ecology, WSL and ETH Zürich, Switzerland), Benjamin Flück [aut] (Landscape Ecology, WSL and ETH Zürich, Switzerland), Fabian Fopp [aut] (Landscape Ecology, WSL and ETH Zürich, Switzerland), Juliano S. Cabral [aut] (Ecosystem Modeling, Center for Computational and Theoretical Biology, University of Würzburg, Würzburg, Germany), Florian Hartig [aut] (Theoretical Ecology, University of Regensburg, Regensburg, Germany), Mikael Pontarp [aut] (Department of Biology, Lund University, Lund, Sweden), Charles Novaes de Santana [ctb] (Landscape Ecology, WSL and ETH Zürich, Switzerland), Thiago F. Rangel [aut] (Department of Ecology, Universidade Federal de Goiás, Goiás, Brazil), Theo Gaboriau [ctb] (Depatment of Computational Biology, Lausanne University, Switzerland), Loïc Pellissier [aut, ths] (Landscape Ecology, WSL and ETH Zürich, Switzerland) |
| Maintainer: | Oskar Hagen <oskar at hagen.bio> |
| BugReports: | https://github.com/project-Gen3sis/R-package/issues |
| License: | GPL-3 |
| URL: | https://github.com/project-Gen3sis/R-package |
| NeedsCompilation: | yes |
| Citation: | gen3sis citation info |
| Materials: | README, NEWS |
| CRAN checks: | gen3sis results |
| Reference manual: | gen3sis.html , gen3sis.pdf |
| Vignettes: |
3. Creating configurations (gen3sis input) (source, R code) 2. Creating landscapes (gen3sis input) (source, R code) 4. Example designing landscapes (source, R code) 1. Introducing gen3sis (source, R code) |
| Package source: | gen3sis_1.6.0.tar.gz |
| Windows binaries: | r-devel: gen3sis_1.6.0.zip, r-release: gen3sis_1.6.0.zip, r-oldrel: gen3sis_1.6.0.zip |
| macOS binaries: | r-release (arm64): gen3sis_1.6.0.tgz, r-oldrel (arm64): gen3sis_1.6.0.tgz, r-release (x86_64): gen3sis_1.6.0.tgz, r-oldrel (x86_64): gen3sis_1.6.0.tgz |
| Old sources: | gen3sis archive |
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