func2vis: Clean and Visualize Over Expression Results from 'ConsensusPathDB'

Provides functions to have visualization and clean-up of enriched gene ontologies (GO) terms, protein complexes and pathways (obtained from multiple databases) using 'ConsensusPathDB' from gene set over-expression analysis. Performs clustering of pathway based on similarity of over-expressed gene sets and visualizations similar to Ingenuity Pathway Analysis (IPA) when up and down regulated genes are known. The methods are described in a paper currently submitted by Orecchioni et al, 2020 in Nanoscale.

Version:	1.0-3
Depends:	ggplot2, igraph, devtools, ggrepel, grDevices, randomcoloR, R (≥ 4.0)
Published:	2023-03-16
DOI:	10.32614/CRAN.package.func2vis
Author:	Raghvendra Mall [aut, cre]
Maintainer:	Raghvendra Mall <raghvendra5688 at gmail.com>
License:	GPL (≥ 3)
NeedsCompilation:	yes
In views:	Omics
CRAN checks:	func2vis results

Documentation:

Reference manual:

func2vis.html , func2vis.pdf

Downloads:

Package source:	func2vis_1.0-3.tar.gz
Windows binaries:	r-devel: func2vis_1.0-3.zip, r-release: func2vis_1.0-3.zip, r-oldrel: func2vis_1.0-3.zip
macOS binaries:	r-release (arm64): func2vis_1.0-3.tgz, r-oldrel (arm64): func2vis_1.0-3.tgz, r-release (x86_64): func2vis_1.0-3.tgz, r-oldrel (x86_64): func2vis_1.0-3.tgz
Old sources:	func2vis archive

Linking:

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