dynwrap: Representing and Inferring Single-Cell Trajectories
Provides functionality to infer trajectories from single-cell data, represent them into a common format, and adapt them. Other biological information can also be added, such as cellular grouping, RNA velocity and annotation. Saelens et al. (2019) <doi:10.1038/s41587-019-0071-9>.
| Version: | 1.2.4 |
| Depends: | R (≥ 3.0.0) |
| Imports: | assertthat, babelwhale, crayon, dplyr, dynutils (≥ 1.0.3), dynparam, igraph, glue, magrittr, Matrix, methods, purrr, processx, readr, stringr, reshape2, tibble, tidyr, yaml |
| Suggests: | covr, dyndimred, hdf5r, knitr, pkgload, ranger, rmarkdown, testthat |
| Published: | 2023-07-19 |
| DOI: | 10.32614/CRAN.package.dynwrap |
| Author: | Robrecht Cannoodt 
[aut, cre] (github: rcannood),
Wouter Saelens
[aut] (github: zouter) |
| Maintainer: | Robrecht Cannoodt <rcannood at gmail.com> |
| BugReports: | https://github.com/dynverse/dynwrap/issues |
| License: | MIT + file LICENSE |
| URL: | https://github.com/dynverse/dynwrap |
| NeedsCompilation: | no |
| Citation: | dynwrap citation info |
| Materials: | README, NEWS |
| In views: | Omics |
| CRAN checks: | dynwrap results |
Documentation:
| Reference manual: | dynwrap.html , dynwrap.pdf |
| Vignettes: |
Creating a TI method: Container (source, R code) Creating a TI method: Script (source, R code) Creating a TI method: R (source, R code) Creating a TI method: Wrapping trajectories (source, R code) |
Downloads:
| Package source: | dynwrap_1.2.4.tar.gz |
| Windows binaries: | r-devel: dynwrap_1.2.4.zip, r-release: dynwrap_1.2.4.zip, r-oldrel: dynwrap_1.2.4.zip |
| macOS binaries: | r-release (arm64): dynwrap_1.2.4.tgz, r-oldrel (arm64): dynwrap_1.2.4.tgz, r-release (x86_64): dynwrap_1.2.4.tgz, r-oldrel (x86_64): dynwrap_1.2.4.tgz |
| Old sources: | dynwrap archive |
Reverse dependencies:
| Reverse imports: | SCORPIUS |
| Reverse suggests: | dyngen |
Linking:
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