Implements the count splitting methodology from Neufeld et al. (2022) <doi:10.1093/biostatistics/kxac047> and Neufeld et al. (2023) <doi:10.48550/arXiv.2307.12985>. Intended for turning a matrix of single-cell RNA sequencing counts, or similar count datasets, into independent folds that can be used for training/testing or cross validation. Assumes that the entries in the matrix are from a Poisson or a negative binomial distribution.
| Version: | 4.0.0 |
| Depends: | R (≥ 2.10) |
| Imports: | Matrix, methods, Rcpp |
| LinkingTo: | Rcpp |
| Suggests: | knitr, rmarkdown |
| Published: | 2023-08-24 |
| DOI: | 10.32614/CRAN.package.countsplit |
| Author: | Anna Neufeld [aut, cre, cph], Mischko Heming [ctb], Joshua Popp [ctb] |
| Maintainer: | Anna Neufeld <aneufeld at fredhutch.org> |
| BugReports: | https://github.com/anna-neufeld/countsplit/issues |
| License: | MIT + file LICENSE |
| URL: | https://github.com/anna-neufeld/countsplit |
| NeedsCompilation: | yes |
| Materials: | README, NEWS |
| CRAN checks: | countsplit results |
| Reference manual: | countsplit.html , countsplit.pdf |
| Package source: | countsplit_4.0.0.tar.gz |
| Windows binaries: | r-devel: countsplit_4.0.0.zip, r-release: countsplit_4.0.0.zip, r-oldrel: countsplit_4.0.0.zip |
| macOS binaries: | r-release (arm64): countsplit_4.0.0.tgz, r-oldrel (arm64): countsplit_4.0.0.tgz, r-release (x86_64): countsplit_4.0.0.tgz, r-oldrel (x86_64): countsplit_4.0.0.tgz |
| Reverse imports: | tcv |
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