bbmix: Bayesian Model for Genotyping using RNA-Seq
The method models RNA-seq reads using a mixture of 3 beta-binomial distributions to generate posterior probabilities for genotyping bi-allelic single nucleotide polymorphisms. Elena Vigorito, Anne Barton, Costantino Pitzalis, Myles J. Lewis and Chris Wallace (2023) <doi:10.1093/bioinformatics/btad393> "BBmix: a Bayesian beta-binomial mixture model for accurate genotyping from RNA-sequencing."
| Version: |
1.0.0 |
| Depends: |
R (≥ 3.4.0) |
| Imports: |
methods, Rcpp (≥ 0.12.0), rstan (≥ 2.18.1), R.utils, data.table, rmutil |
| LinkingTo: |
BH (≥ 1.66.0), Rcpp (≥ 0.12.0), RcppEigen (≥ 0.3.3.3.0), rstan (≥ 2.18.1), StanHeaders (≥ 2.18.0) |
| Suggests: |
knitr, rmarkdown |
| Published: |
2023-07-06 |
| DOI: |
10.32614/CRAN.package.bbmix |
| Author: |
Elena Vigorito [aut, cre],
Chris Wallace [aut] |
| Maintainer: |
Elena Vigorito <elena.vigorito at mrc-bsu.cam.ac.uk> |
| License: |
GPL-2 |
| NeedsCompilation: |
yes |
| SystemRequirements: |
GNU make |
| Materials: |
README |
| CRAN checks: |
bbmix results |
Documentation:
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