VertexWiseR: Simplified Vertex-Wise Analyses of Whole-Brain and Hippocampal Surface
Provides functions to run statistical analyses on surface-based neuroimaging data, computing measures including cortical thickness and surface area of the whole-brain and of the hippocampi. It can make use of 'FreeSurfer', 'fMRIprep', 'XCP-D', 'HCP' and 'CAT12' preprocessed datasets and 'HippUnfold' hippocampal segmentation outputs for a given sample by restructuring the data values into a single file. The single file can then be used by the package for analyses independently from its base dataset and without need for its access.
| Version: | 1.4.3 |
| Depends: | R (≥ 4.0.0) |
| Imports: | doParallel, doSNOW, foreach, freesurferformats, fs, gifti, grDevices, grid, igraph, methods, parallel, plotly, png, rappdirs, reticulate, stats, stringr, tools, utils |
| Suggests: | R.rsp |
| Published: | 2025-10-21 |
| DOI: | 10.32614/CRAN.package.VertexWiseR |
| Author: | Junhong Yu  [aut],
Charly Billaud
[aut, cre] |
| Maintainer: | Charly Billaud <charly.billaud at ntu.edu.sg> |
| License: | GPL-3 |
| URL: | https://cogbrainhealthlab.github.io/VertexWiseR/ |
| NeedsCompilation: | no |
| SystemRequirements: | Miniconda3 (v24.9.2), Python (<= v3.12), BrainStat (v0.4.2), vtk (v9.3.1), numpy (<= v1.26.4), nilearn (<= v0.12.0), netneurotools (<= v0.2.5) |
| Citation: | VertexWiseR citation info |
| Materials: | README, NEWS |
| CRAN checks: | VertexWiseR results |
Documentation:
Downloads:
| Package source: | VertexWiseR_1.4.3.tar.gz |
| Windows binaries: | r-devel: VertexWiseR_1.4.3.zip, r-release: VertexWiseR_1.4.3.zip, r-oldrel: VertexWiseR_1.4.3.zip |
| macOS binaries: | r-release (arm64): VertexWiseR_1.4.3.tgz, r-oldrel (arm64): VertexWiseR_1.4.3.tgz, r-release (x86_64): VertexWiseR_1.4.3.tgz, r-oldrel (x86_64): VertexWiseR_1.4.3.tgz |
| Old sources: | VertexWiseR archive |
Linking:
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