Implements a method to combine multiple levels of multiple
  sequence alignment to uncover the structure of complex DNA rearrangements.
| Version: | 0.9.2 | 
| Depends: | R (≥ 4.4) | 
| Imports: | methods, graphics, grDevices, oompaBase, Biostrings, NameNeedle, dendextend, ape, stringr, igraph, Polychrome, colorspace | 
| Suggests: | msa, viridisLite, R.rsp, knitr, rmarkdown | 
| Published: | 2025-09-24 | 
| DOI: | 10.32614/CRAN.package.SVAlignR | 
| Author: | Kevin R. Coombes [aut, cre] | 
| Maintainer: | Kevin R. Coombes  <krc at silicovore.com> | 
| License: | Apache License (== 2.0) | 
| URL: | http://oompa.r-forge.r-project.org/ | 
| NeedsCompilation: | no | 
| CRAN checks: | SVAlignR results |