Probabilistic factor analysis for spatially-aware dimension reduction across multi-section spatial transcriptomics data with millions of spatial locations. More details can be referred to Wei Liu, et al. (2023) <doi:10.1101/2023.07.11.548486>.
| Version: | 1.6 |
| Depends: | R (≥ 4.0.0), gtools |
| Imports: | Rcpp (≥ 1.0.10), furrr, future, ggplot2, DR.SC, Matrix, mclust, PRECAST, pbapply, irlba, Seurat, parallel, harmony, methods, stats, utils |
| LinkingTo: | Rcpp, RcppArmadillo |
| Suggests: | knitr, rmarkdown, performance, nnet, biomaRt, scater, ggrepel, RANN, grDevices |
| Published: | 2025-03-27 |
| DOI: | 10.32614/CRAN.package.ProFAST |
| Author: | Wei Liu [aut, cre], Xiao Zhang [aut], Jin Liu [aut] |
| Maintainer: | Wei Liu <liuweideng at gmail.com> |
| BugReports: | https://github.com/feiyoung/ProFAST/issues |
| License: | GPL-3 |
| URL: | https://github.com/feiyoung/ProFAST |
| NeedsCompilation: | yes |
| Materials: | README |
| CRAN checks: | ProFAST results |
| Reference manual: | ProFAST.html , ProFAST.pdf |
| Vignettes: |
CoFAST: NSCLC CosMx data coembedding (source, R code) FAST: single DLPFC section (source, R code) FAST: two DLPFC sections (source, R code) FAST: simulation (source, R code) CoFAST: PBMC scRNA-seq data coembedding (source, R code) |
| Package source: | ProFAST_1.6.tar.gz |
| Windows binaries: | r-devel: ProFAST_1.6.zip, r-release: ProFAST_1.6.zip, r-oldrel: ProFAST_1.6.zip |
| macOS binaries: | r-release (arm64): ProFAST_1.6.tgz, r-oldrel (arm64): ProFAST_1.6.tgz, r-release (x86_64): ProFAST_1.6.tgz, r-oldrel (x86_64): ProFAST_1.6.tgz |
| Old sources: | ProFAST archive |
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