EvoPhylo: Pre- And Postprocessing of Morphological Data from Relaxed Clock Bayesian Phylogenetics
Performs automated morphological character partitioning for phylogenetic analyses and analyze macroevolutionary parameter outputs from clock (time-calibrated) Bayesian inference analyses, following concepts introduced by Simões and Pierce (2021) <doi:10.1038/s41559-021-01532-x>.
| Version: | 0.3.5 |
| Depends: | R (≥ 4.0.0) |
| Imports: | ape (≥ 1.16.2), dplyr (≥ 1.0.8), cluster (≥ 2.1.2), deeptime (≥ 0.2.0), ggplot2 (≥ 3.3.5), ggrepel (≥ 0.9.1), ggtree (≥ 3.1.5.902), patchwork, treeio (≥ 1.16.2), Rtsne (≥ 0.15), unglue (≥ 0.1.0), tidyr, tibble, tools, phangorn, magrittr |
| Suggests: | devtools, kableExtra, knitr, rmarkdown |
| Published: | 2025-08-27 |
| DOI: | 10.32614/CRAN.package.EvoPhylo |
| Author: | Tiago Simoes 
[cre, aut],
Noah Greifer
[aut],
Joelle Barido-Sottani
[aut],
Stephanie Pierce
[aut] |
| Maintainer: | Tiago Simoes <trsimoes87 at gmail.com> |
| BugReports: | https://github.com/tiago-simoes/EvoPhylo/issues |
| License: | GPL-2 | GPL-3 [expanded from: GPL (≥ 2)] |
| URL: | https://github.com/tiago-simoes/EvoPhylo, https://tiago-simoes.github.io/EvoPhylo/ |
| NeedsCompilation: | no |
| Citation: | EvoPhylo citation info |
| Materials: | NEWS |
| In views: | Phylogenetics |
| CRAN checks: | EvoPhylo results |
Documentation:
Downloads:
| Package source: | EvoPhylo_0.3.5.tar.gz |
| Windows binaries: | r-devel: EvoPhylo_0.3.5.zip, r-release: EvoPhylo_0.3.5.zip, r-oldrel: EvoPhylo_0.3.5.zip |
| macOS binaries: | r-release (arm64): EvoPhylo_0.3.5.tgz, r-oldrel (arm64): EvoPhylo_0.3.5.tgz, r-release (x86_64): EvoPhylo_0.3.5.tgz, r-oldrel (x86_64): EvoPhylo_0.3.5.tgz |
| Old sources: | EvoPhylo archive |
Linking:
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