EmbedSOM: Fast Embedding Guided by Self-Organizing Map
Provides a smooth mapping of multidimensional points into
low-dimensional space defined by a self-organizing map. Designed to work
with 'FlowSOM' and flow-cytometry use-cases. See Kratochvil et al. (2019)
<doi:10.12688/f1000research.21642.1>.
| Version: |
2.2 |
| Depends: |
R (≥ 3.2) |
| Imports: |
ggplot2, igraph, Matrix, Rtsne, umap, uwot |
| Suggests: |
knitr, rmarkdown |
| Published: |
2025-01-31 |
| DOI: |
10.32614/CRAN.package.EmbedSOM |
| Author: |
Mirek Kratochvil [aut, cre],
Sofie Van Gassen [cph],
Britt Callebaut [cph],
Yvan Saeys [cph],
Ron Wehrens [cph] |
| Maintainer: |
Mirek Kratochvil <exa.exa at gmail.com> |
| License: |
GPL (≥ 3) |
| URL: |
https://github.com/exaexa/EmbedSOM |
| NeedsCompilation: |
yes |
| Citation: |
EmbedSOM citation info |
| Materials: |
README |
| CRAN checks: |
EmbedSOM results |
Documentation:
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