Biotracers and stomach content analyses are combined in a Bayesian hierarchical model to estimate a probabilistic topology matrix (all trophic link probabilities) and a diet matrix (all diet proportions). The package relies on the JAGS software and the 'jagsUI' package to run a Markov chain Monte Carlo approximation of the different variables.
| Version: | 2.0.1 |
| Depends: | R (≥ 3.5) |
| Imports: | ggplot2 (≥ 3.2), coda (≥ 0.19), stats (≥ 3.6), utils (≥ 3.6), jagsUI (≥ 1.5.2), ggmcmc (≥ 1.1) |
| Suggests: | knitr, rmarkdown, devtools, testthat (≥ 3.0.0) |
| Published: | 2024-03-25 |
| DOI: | 10.32614/CRAN.package.EcoDiet |
| Author: | Pierre-Yves Hernvann [cre, aut], Didier Gascuel [aut], Dorothee Kopp [aut], Marianne Robert [aut], Jerome Guitton [aut], Etienne Rivot [aut], Heloise Thero [aut] |
| Maintainer: | Pierre-Yves Hernvann <pierre.yves.hernvann at gmail.com> |
| BugReports: | https://github.com/pyhernvann/EcoDiet/issues |
| License: | GPL-2 | GPL-3 [expanded from: GPL (≥ 2)] |
| URL: | https://github.com/pyhernvann/EcoDiet |
| NeedsCompilation: | no |
| SystemRequirements: | JAGS (>= 4.3) |
| Citation: | EcoDiet citation info |
| Materials: | README, NEWS |
| CRAN checks: | EcoDiet results |
| Reference manual: | EcoDiet.html , EcoDiet.pdf |
| Vignettes: |
3. How to deal with convergence problems (source, R code) 1. Introduction - How to use EcoDiet (source, R code) 2. EcoDiet explored on a realistic example (source, R code) |
| Package source: | EcoDiet_2.0.1.tar.gz |
| Windows binaries: | r-devel: EcoDiet_2.0.1.zip, r-release: EcoDiet_2.0.1.zip, r-oldrel: EcoDiet_2.0.1.zip |
| macOS binaries: | r-release (arm64): EcoDiet_2.0.1.tgz, r-oldrel (arm64): EcoDiet_2.0.1.tgz, r-release (x86_64): EcoDiet_2.0.1.tgz, r-oldrel (x86_64): EcoDiet_2.0.1.tgz |
| Old sources: | EcoDiet archive |
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