DAISIE: Dynamical Assembly of Islands by Speciation, Immigration and Extinction
Simulates and computes the (maximum) likelihood of a dynamical model of island biota assembly through speciation, immigration and extinction. See Valente et al. (2015) <doi:10.1111/ele.12461>.
| Version: | 4.6.0 |
| Depends: | R (≥ 4.2.0) |
| Imports: | DDD (≥ 5.0), deSolve, doParallel, foreach, graphics, magrittr, Matrix, parallel, pracma, Rcpp (≥ 1.0.10), stats, subplex, tensor, testit, utils |
| LinkingTo: | Rcpp (≥ 1.0.10), RcppEigen, BH (≥ 1.81.0-1) |
| Suggests: | ape, covr, dplyr, future, future.apply, ggplot2, ggtree (≥ 3.0.0), gridExtra, knitr, phytools, purrr, rmarkdown, testthat (≥ 2.1.0), tibble, tidytree, tidyr |
| Enhances: | doMC |
| Published: | 2025-06-01 |
| DOI: | 10.32614/CRAN.package.DAISIE |
| Author: | Rampal S. Etienne 
[aut, cre],
Luis Valente
[aut],
Albert B. Phillimore
[aut],
Bart Haegeman
[aut],
Joshua W. Lambert
[aut],
Pedro Santos Neves
[aut],
Shu Xie [aut],
Richèl J.C. Bilderbeek
[aut],
Hanno Hildenbrandt
[aut],
Torsten Hauffe
[ctb],
Giovanni Laudanno
[ctb],
Nadiah Kristensen
[ctb],
Ornela Dehayem Nanwou
[ctb],
Raphael Scherrer
[ctb] |
| Maintainer: | Rampal S. Etienne <r.s.etienne at rug.nl> |
| BugReports: | https://github.com/rsetienne/DAISIE/issues |
| License: | GPL (≥ 3) | file LICENSE |
| Copyright: | See the file COPYRIGHTS for various DAISIE copyright details DAISIE copyright details |
| URL: | https://github.com/rsetienne/DAISIE, https://rsetienne.github.io/DAISIE/ |
| NeedsCompilation: | yes |
| SystemRequirements: | C++17 |
| Materials: | NEWS |
| CRAN checks: | DAISIE results |
Documentation:
| Reference manual: | DAISIE.html , DAISIE.pdf |
| Vignettes: |
DAISIE FAQs (source) Demo: Fitting clade-specific and island-wide diversity-dependence models in DAISIE (source, R code) Demo optimizing parameters (source, R code) Demo simulating islands (source, R code) DAISIE 'stac' values (source, R code) |
Downloads:
| Package source: | DAISIE_4.6.0.tar.gz |
| Windows binaries: | r-devel: DAISIE_4.6.0.zip, r-release: DAISIE_4.6.0.zip, r-oldrel: DAISIE_4.6.0.zip |
| macOS binaries: | r-release (arm64): DAISIE_4.6.0.tgz, r-oldrel (arm64): DAISIE_4.6.0.tgz, r-release (x86_64): DAISIE_4.6.0.tgz, r-oldrel (x86_64): DAISIE_4.6.0.tgz |
| Old sources: | DAISIE archive |
Reverse dependencies:
| Reverse imports: | DAISIEprep |
| Reverse suggests: | nLTT |
Linking:
Please use the canonical form https://CRAN.R-project.org/package=DAISIE to link to this page.