CBASSED50: Process CBASS-Derived PAM Data

Tools to process CBASS-derived PAM data efficiently. Minimal requirements are PAM-based photosynthetic efficiency data (or data from any other continuous variable that changes with temperature, e.g. relative bleaching scores) from 4 coral samples (nubbins) subjected to 4 temperature profiles of at least 2 colonies from 1 coral species from 1 site. Please refer to the following CBASS (Coral Bleaching Automated Stress System) papers for in-depth information regarding CBASS acute thermal stress assays, experimental design considerations, and ED5/ED50/ED95 thermal parameters: Nicolas R. Evensen et al. (2023) <doi:10.1002/lom3.10555> Christian R. Voolstra et al. (2020) <doi:10.1111/gcb.15148> Christian R. Voolstra et al. (2025) <doi:10.1146/annurev-marine-032223-024511>.

Version: 0.2.0
Depends: R (≥ 3.5.0)
Imports: drc, rlog, stats, utils, dplyr, ggplot2, readxl, glue
Suggests: testthat (≥ 3.0.0)
Published: 2025-06-06
DOI: 10.32614/CRAN.package.CBASSED50
Author: Yulia Iakovleva ORCID iD [aut], Luigi Colin ORCID iD [aut, cre], Christian Robert Voolstra ORCID iD [aut]
Maintainer: Luigi Colin <reefgenomics at gmail.com>
License: MIT + file LICENSE
NeedsCompilation: no
CRAN checks: CBASSED50 results

Documentation:

Reference manual: CBASSED50.html , CBASSED50.pdf

Downloads:

Package source: CBASSED50_0.2.0.tar.gz
Windows binaries: r-devel: CBASSED50_0.2.0.zip, r-release: CBASSED50_0.2.0.zip, r-oldrel: CBASSED50_0.2.0.zip
macOS binaries: r-release (arm64): CBASSED50_0.2.0.tgz, r-oldrel (arm64): CBASSED50_0.2.0.tgz, r-release (x86_64): CBASSED50_0.2.0.tgz, r-oldrel (x86_64): CBASSED50_0.2.0.tgz

Linking:

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