Last updated on 2025-10-31 00:50:58 CET.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 0.1.1 | 15.46 | 97.37 | 112.83 | NOTE | |
| r-devel-linux-x86_64-debian-gcc | 0.1.1 | 9.18 | 65.78 | 74.96 | NOTE | |
| r-devel-linux-x86_64-fedora-clang | 0.1.1 | 63.00 | 126.15 | 189.15 | NOTE | |
| r-devel-linux-x86_64-fedora-gcc | 0.1.1 | 29.00 | 139.17 | 168.17 | NOTE | |
| r-devel-windows-x86_64 | 0.1.1 | 14.00 | 96.00 | 110.00 | NOTE | |
| r-patched-linux-x86_64 | 0.1.1 | 14.61 | 94.97 | 109.58 | NOTE | |
| r-release-linux-x86_64 | 0.1.1 | 14.13 | 95.95 | 110.08 | NOTE | |
| r-release-macos-arm64 | 0.1.1 | 6.00 | 39.00 | 45.00 | NOTE | |
| r-release-macos-x86_64 | 0.1.1 | 18.00 | 90.00 | 108.00 | NOTE | |
| r-release-windows-x86_64 | 0.1.1 | 14.00 | 100.00 | 114.00 | NOTE | |
| r-oldrel-macos-arm64 | 0.1.1 | 6.00 | 41.00 | 47.00 | NOTE | |
| r-oldrel-macos-x86_64 | 0.1.1 | 9.00 | 62.00 | 71.00 | NOTE | |
| r-oldrel-windows-x86_64 | 0.1.1 | 20.00 | 123.00 | 143.00 | NOTE |
Version: 0.1.1
Check: Rd files
Result: NOTE
checkRd: (-1) bcfrailph.Rd:35: Lost braces; missing escapes or markup?
35 | \item \code{coefficients} - {A vector of estimated Covariate coefficients.}
| ^
checkRd: (-1) bcfrailph.Rd:36: Lost braces; missing escapes or markup?
36 | \item \code{frailparest} - {A vector of estimated Frailty parameters i.e. frailty variance and correlation.}
| ^
checkRd: (-1) bcfrailph.Rd:37: Lost braces; missing escapes or markup?
37 | \item \code{stderr}-{A vector containing the Standard error of the Estimated parameters both covariate coefficients and frailty parameters.}
| ^
checkRd: (-1) bcfrailph.Rd:42: Lost braces; missing escapes or markup?
42 | \item \code{X}-{Matrix of observed covariates.}
| ^
checkRd: (-1) bcfrailph.Rd:43: Lost braces; missing escapes or markup?
43 | \item \code{time}-{the observed survival time.}
| ^
checkRd: (-1) bcfrailph.Rd:44: Lost braces; missing escapes or markup?
44 | \item \code{censor}-{censoring indicator.}
| ^
checkRd: (-1) bcfrailph.Rd:45: Lost braces; missing escapes or markup?
45 | \item \code{resid}-{the martingale residuals.}
| ^
checkRd: (-1) bcfrailph.Rd:46: Lost braces; missing escapes or markup?
46 | \item \code{lin.prid}-{the vector of linear predictors.}
| ^
checkRd: (-1) bcfrailph.Rd:47: Lost braces; missing escapes or markup?
47 | \item \code{frail}-{estimated Frailty values.}
| ^
checkRd: (-1) bcfrailph.Rd:48: Lost braces; missing escapes or markup?
48 | \item \code{iteration}-{Number of outer iterations.}
| ^
checkRd: (-1) bcfrailph.Rd:49: Lost braces; missing escapes or markup?
49 | \item \code{e.time}-{the vector of unique event times.}
| ^
checkRd: (-1) bcfrailph.Rd:50: Lost braces; missing escapes or markup?
50 | \item \code{n.event}- {the number of events at each of the unique event times.}
| ^
checkRd: (-1) bcfrailph.Rd:51: Lost braces; missing escapes or markup?
51 | \item \code{convergence}-{an indicator, 1 if converge and 0 otherwise.}
| ^
checkRd: (-1) bcfrailph.Rd:52: Lost braces; missing escapes or markup?
52 | \item \code{history}-{an array containing records of estimates and other information on each iterations.}
| ^
checkRd: (-1) fitbccv.gammasp.Rd:32: Lost braces; missing escapes or markup?
32 | \item \code{coefficients} - {A vector of estimated Covariate coefficients.}
| ^
checkRd: (-1) fitbccv.gammasp.Rd:33: Lost braces; missing escapes or markup?
33 | \item \code{frailparest} - {A vector of estimated Frailty parameters i.e. frailty variance and correlation.}
| ^
checkRd: (-1) fitbccv.gammasp.Rd:34: Lost braces; missing escapes or markup?
34 | \item \code{stderr}-{A vector containing the Standard error of the Estimated parameters both covariate coefficients and frailty parameters.}
| ^
checkRd: (-1) fitbccv.gammasp.Rd:39: Lost braces; missing escapes or markup?
39 | \item \code{X}-{Matrix of observed covariates.}
| ^
checkRd: (-1) fitbccv.gammasp.Rd:40: Lost braces; missing escapes or markup?
40 | \item \code{time}-{the observed survival time.}
| ^
checkRd: (-1) fitbccv.gammasp.Rd:41: Lost braces; missing escapes or markup?
41 | \item \code{censor}-{censoring indicator.}
| ^
checkRd: (-1) fitbccv.gammasp.Rd:42: Lost braces; missing escapes or markup?
42 | \item \code{resid}-{the martingale residuals.}
| ^
checkRd: (-1) fitbccv.gammasp.Rd:43: Lost braces; missing escapes or markup?
43 | \item \code{lin.prid}-{the vector of linear predictors.}
| ^
checkRd: (-1) fitbccv.gammasp.Rd:44: Lost braces; missing escapes or markup?
44 | \item \code{frail}-{estimated Frailty values.}
| ^
checkRd: (-1) fitbccv.gammasp.Rd:45: Lost braces; missing escapes or markup?
45 | \item \code{iteration}-{Number of outer iterations.}
| ^
checkRd: (-1) fitbccv.gammasp.Rd:46: Lost braces; missing escapes or markup?
46 | \item \code{e.time}-{the vector of unique event times.}
| ^
checkRd: (-1) fitbccv.gammasp.Rd:47: Lost braces; missing escapes or markup?
47 | \item \code{n.event}- {the number of events at each of the unique event times.}
| ^
checkRd: (-1) fitbccv.gammasp.Rd:48: Lost braces; missing escapes or markup?
48 | \item \code{convergence}-{an indicator, 1 if converge and 0 otherwise.}
| ^
checkRd: (-1) fitbccv.gammasp.Rd:49: Lost braces; missing escapes or markup?
49 | \item \code{history}-{an array containing records of estimates and other information on each iterations.}
| ^
checkRd: (-1) fitbccv.lognsp.Rd:21: Lost braces; missing escapes or markup?
21 | \item \code{coefficients} - {A vector of estimated Covariate coefficients.}
| ^
checkRd: (-1) fitbccv.lognsp.Rd:22: Lost braces; missing escapes or markup?
22 | \item \code{frailparest} - {A vector of estimated Frailty parameters i.e. frailty variance and correlation.}
| ^
checkRd: (-1) fitbccv.lognsp.Rd:23: Lost braces; missing escapes or markup?
23 | \item \code{stderr}-{A vector containing the Standard error of the Estimated parameters both covariate coefficients and frailty parameters.}
| ^
checkRd: (-1) fitbccv.lognsp.Rd:28: Lost braces; missing escapes or markup?
28 | \item \code{X}-{Matrix of observed covariates.}
| ^
checkRd: (-1) fitbccv.lognsp.Rd:29: Lost braces; missing escapes or markup?
29 | \item \code{time}-{the observed survival time.}
| ^
checkRd: (-1) fitbccv.lognsp.Rd:30: Lost braces; missing escapes or markup?
30 | \item \code{censor}-{censoring indicator.}
| ^
checkRd: (-1) fitbccv.lognsp.Rd:31: Lost braces; missing escapes or markup?
31 | \item \code{resid}-{the martingale residuals.}
| ^
checkRd: (-1) fitbccv.lognsp.Rd:32: Lost braces; missing escapes or markup?
32 | \item \code{lin.prid}-{the vector of linear predictors.}
| ^
checkRd: (-1) fitbccv.lognsp.Rd:33: Lost braces; missing escapes or markup?
33 | \item \code{frail}-{estimated Frailty values.}
| ^
checkRd: (-1) fitbccv.lognsp.Rd:34: Lost braces; missing escapes or markup?
34 | \item \code{iteration}-{Number of outer iterations.}
| ^
checkRd: (-1) fitbccv.lognsp.Rd:35: Lost braces; missing escapes or markup?
35 | \item \code{e.time}-{the vector of unique event times.}
| ^
checkRd: (-1) fitbccv.lognsp.Rd:36: Lost braces; missing escapes or markup?
36 | \item \code{n.event}- {the number of events at each of the unique event times.}
| ^
checkRd: (-1) fitbccv.lognsp.Rd:37: Lost braces; missing escapes or markup?
37 | \item \code{convergence}-{an indicator, 1 if converge and 0 otherwise.}
| ^
checkRd: (-1) fitbccv.lognsp.Rd:38: Lost braces; missing escapes or markup?
38 | \item \code{history}-{an array containing records of estimates and other information on each iterations.}
| ^
checkRd: (-1) shrgamsp.Rd:32: Lost braces; missing escapes or markup?
32 | \item \code{coefficients} - {A vector of estimated Covariate coefficients.}
| ^
checkRd: (-1) shrgamsp.Rd:33: Lost braces; missing escapes or markup?
33 | \item \code{frailparest} - {A vector of estimated Frailty parameters i.e. frailty variance and correlation.}
| ^
checkRd: (-1) shrgamsp.Rd:34: Lost braces; missing escapes or markup?
34 | \item \code{vcov}- {Variance Covariance matrix of the Estimated Covariate coefficients obtained from the observed information matrix.}
| ^
checkRd: (-1) shrgamsp.Rd:35: Lost braces; missing escapes or markup?
35 | \item \code{stderr}-{A vector containing the Standard error of the Estimated parameters both covariate coefficients and frailty parameter.}
| ^
checkRd: (-1) shrgamsp.Rd:40: Lost braces; missing escapes or markup?
40 | \item \code{X}-{Matrix of observed covariates.}
| ^
checkRd: (-1) shrgamsp.Rd:41: Lost braces; missing escapes or markup?
41 | \item \code{time}-{the observed survival time.}
| ^
checkRd: (-1) shrgamsp.Rd:42: Lost braces; missing escapes or markup?
42 | \item \code{censor}-{censoring indicator.}
| ^
checkRd: (-1) shrgamsp.Rd:43: Lost braces; missing escapes or markup?
43 | \item \code{resid}-{the martingale residuals.}
| ^
checkRd: (-1) shrgamsp.Rd:44: Lost braces; missing escapes or markup?
44 | \item \code{lin.prid}-{the vector of linear predictors.}
| ^
checkRd: (-1) shrgamsp.Rd:45: Lost braces; missing escapes or markup?
45 | \item \code{frail}-{estimated Frailty values.}
| ^
checkRd: (-1) shrgamsp.Rd:46: Lost braces; missing escapes or markup?
46 | \item \code{iteration}-{Number of outer iterations.}
| ^
checkRd: (-1) shrgamsp.Rd:47: Lost braces; missing escapes or markup?
47 | \item \code{e.time}-{the vector of unique event times.}
| ^
checkRd: (-1) shrgamsp.Rd:48: Lost braces; missing escapes or markup?
48 | \item \code{n.event}- {the number of events at each of the unique event times.}
| ^
checkRd: (-1) shrgamsp.Rd:49: Lost braces
49 | \item \code{convergence}-{an indicator of convergence . see \code{\link{nlminb}}.}
| ^
checkRd: (-1) simbcfrailph.Rd:52: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) simbcfrailph.Rd:54: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) simbcfrailph.Rd:56: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) simbcfrailph.Rd:58: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) simbcfrailph.Rd:60: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) simbcfrailph.Rd:62: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) simbcfrailph.Rd:64: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) simstdybcf.Rd:57: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) simstdybcf.Rd:59: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) simstdybcf.Rd:61: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) simstdybcf.Rd:63: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) simstdybcf.Rd:65: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) simstdybcf.Rd:67: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) simstdybcf.Rd:69: Lost braces in \itemize; \value handles \item{}{} directly
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64
Version: 0.1.1
Check: Rd cross-references
Result: NOTE
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
shrgamsp.Rd: coxph
simstdybcf.Rd: coxph
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-windows-x86_64, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-windows-x86_64