e15fdc07d7cd8eab91bc02455798fdf3 *DESCRIPTION
68923126a59e3c9d3ea1903640639b5e *NAMESPACE
f020e979d53923ff587b7797b028cd51 *NEWS.md
ed51967b483ebd115de5dc33d7f932ac *R/RcppExports.R
feec1fbdbbb9ac06f0cd825c91357a77 *R/ashdog.R
94ace5530b2b7e699bd64de5f9387eff *R/data.R
3da738f1735f55be03b0c3983649eceb *R/multidog.R
a143d07db90058568d1d3d18ac428288 *R/oracle.R
5800e9d66b498dc066d16ca6a2fabab7 *R/plot_geno.R
176a857fdee69087265dc4e5e48ba46f *R/pp.R
562e94eb67bbe3ccb4f70e417ac98a45 *R/rflexdog.R
213dd561595dc6d792359ee50223d16d *R/updog.R
25c79b89a727591ad1d73ac9b2a8b203 *README.md
1bf18d9c216b8d95033f0bd2fe2906b2 *build/partial.rdb
d79bc02d3f1ed25cacbffa8b394bb0a4 *build/vignette.rds
7255011096751b0d21c32d94dd13f82a *data/snpdat.RData
0f4eae7684ac52f9450a8505a9accbe3 *data/uitdewilligen.RData
bbc935eaa87bb7418419745536d8ef44 *inst/CITATION
2b51b8889cbf0e888fa228cc78ca5d73 *inst/doc/multidog.R
c26e476944884c0478df38d57152db6d *inst/doc/multidog.Rmd
d10b10cee6fffc36680ed0a89fd5c13e *inst/doc/multidog.html
4e5c9dcc6dc2f9d1e2d4215f3c654fc9 *inst/doc/oracle_calculations.R
c94cbd4ccfb80602966f0cadc91b7621 *inst/doc/oracle_calculations.Rmd
3bd1375441a98a5b6f076eac39b02d2b *inst/doc/oracle_calculations.html
567ebcaea2a8cbb7656289d1d9cab522 *inst/doc/simulate_ngs.R
012bd27eb53ea840ed99cd5d9e7f264e *inst/doc/simulate_ngs.Rmd
aadc1f89685129a9d8f14bc56552dac8 *inst/doc/simulate_ngs.html
0a6c5b3b1f2413f85ce37eee3dca5bf0 *inst/doc/smells_like_updog.R
e6eced298ee4d66c03b781788b552440 *inst/doc/smells_like_updog.Rmd
1c22c2e136ef8e38f6309e198b0067c6 *inst/doc/smells_like_updog.html
fbe7aea4f6ba51339b0b2e115a6a09e0 *inst/include/updog.h
cd59973a8fae2b64b3e30a32d45d105a *inst/include/updog_RcppExports.h
cc4ab4d3bd1032559ffa558437a2d5b2 *man/betabinom.Rd
cef678baacccae88576bf78db4c0ea1d *man/figures/logo.png
639197ef21c08602357cdc2c727d8f59 *man/filter_snp.Rd
f249e2a8242b356e886620628d3aeb69 *man/flexdog.Rd
10f036b0aa017639e741f194461cf75a *man/flexdog_full.Rd
f6fad2d69cd9f3a83557cee51bc503e3 *man/format_multidog.Rd
ee50dfcdbcda46c948422caa9c2fdfee *man/get_q_array.Rd
84d5f137c106948afbf417fd58375138 *man/is.flexdog.Rd
26fea49b5c6b84bf33b046b9f95f70d7 *man/is.multidog.Rd
cc6c1c84427c38f4235d525a8efdcac0 *man/log_sum_exp.Rd
3515444142990dd8471e845e3402be99 *man/log_sum_exp_2.Rd
f6e74d94cfffd6a277ea537b6c0c0432 *man/multidog.Rd
aacc0c166ed55bce5d6d7111747b1ad1 *man/oracle_cor.Rd
42fe1cb3d3f3244bdd78a7db6a6e5743 *man/oracle_cor_from_joint.Rd
b09d426e847d568946d8beb657755892 *man/oracle_joint.Rd
76c91021c3c343ab1e5e668ccd5afa5a *man/oracle_mis.Rd
5991762dd7b9c8cbe6594dcc313a69d6 *man/oracle_mis_from_joint.Rd
acf4d7ac6da54e6bf8b18fc59065dd88 *man/oracle_mis_vec.Rd
3c0613a7b5cdb26236df9d61d69ea8a0 *man/oracle_mis_vec_from_joint.Rd
b4929d06e2ddbd7d6411f9efcb6126dd *man/oracle_plot.Rd
d4ce187d88a620c938c259a2b8c15419 *man/plot.flexdog.Rd
e13386e4fc50925a22a1f77daea63b11 *man/plot.multidog.Rd
a05f3aab06ebe026ddd0f128e9426c27 *man/plot_geno.Rd
3b7b6be6bec290b45e6e083bd9ba18cc *man/rflexdog.Rd
94a12e486dbcf4040416df0395f521bb *man/rgeno.Rd
e043dab6bc88facc76356541650c6219 *man/snpdat.Rd
e45675494d0e0580759d664351cdcbc5 *man/uitdewilligen.Rd
08f08479b1eb333574fea226bc896d7e *man/updog-package.Rd
5b5d9202ce30cb3906c8b1466919af59 *man/wem.Rd
c89d6b95d18721894ab45341d0fbc7a6 *src/Makevars
c89d6b95d18721894ab45341d0fbc7a6 *src/Makevars.win
e61bc667483529cca41a623e24937809 *src/RcppExports.cpp
3a7045a1ed67099d64c51e2a6a78a6ff *src/betabinom.cpp
ecec3e7f87815d1a6c6f8381e5f4e7b0 *src/em.cpp
69cb958fb9bd6fea39a4056d769e0acd *src/flexdog.cpp
ae95f4a4b54af961be7766655671f19c *src/gradients.cpp
2b890edf68d9db185d110a264830eb2b *src/mupdog.h
2db8c05fe6226be768b7356b0ef7c47c *src/objective.cpp
c80d95fd046fc61c1a49d8bd87fda73a *src/oracle.cpp
190301ae35d06d54617263a9c717d409 *src/util_funs.cpp
93ded2750608bb65125a47bd65cae5da *tests/testthat.R
eecf5d7f8604adab1c8ab1ef44aceae8 *tests/testthat/cvx_prob.RDS
b2ac6c40f3e45791917b2fc60f8192b5 *tests/testthat/out_err.RData
d5fce95fd56f33935c5b2e6e56c91825 *tests/testthat/test_dbetabinom.R
0f360ecf6110c073db99dead71eb565d *tests/testthat/test_f1_genotyping.R
4b41370ed899332bf0471c17ea069623 *tests/testthat/test_flexdog.R
0a0dda323835076f2919680cd1632566 *tests/testthat/test_gradients.R
75a4df31e7d6843660089103eee8d837 *tests/testthat/test_objectives.R
72ea9bf58e4131c2a7e9a6daccda0f05 *tests/testthat/test_oracle.R
4b76dcd7ad6d62b7bb3fcfad310c20a9 *tests/testthat/test_rflexdog.R
bb06c195df983760d3575bdd00e3d451 *tests/testthat/test_utils.R
a2f148268e3b30539c57d2ed0cc4e7aa *tests/testthat/test_wikmat.R
6775e60c5a1a5682119d7c6d3c5ffdea *tests/testthat/testdat.RData
c26e476944884c0478df38d57152db6d *vignettes/multidog.Rmd
c94cbd4ccfb80602966f0cadc91b7621 *vignettes/oracle_calculations.Rmd
012bd27eb53ea840ed99cd5d9e7f264e *vignettes/simulate_ngs.Rmd
e6eced298ee4d66c03b781788b552440 *vignettes/smells_like_updog.Rmd
