fc14db4b9fe06e94c2407b98edb46ad1 *DESCRIPTION
b612bdb45bb5779e00f04f0710f81932 *NAMESPACE
d70287282e1c2b5beb06f3b7f63da807 *NEWS.md
d12dbb4ba3890cc82f501aa53e09dc2b *R/RcppExports.R
91842ed0a7ba17628df4cc60ea603b5a *R/aaa-registry.R
c9aa7bb0eebd45a530c2b6cf9a45537d *R/globals.R
7540e0c9087c7386740ce11bf5f34022 *R/immunarch-package.R
36f367ef4c5a6cac6b92c2197d958d2b *R/import-standalone-purrr.R
dd33c7638ebd354d6295ad7e9eb80b6f *R/v0_align_lineage.R
8de48ae9a6b464ac752d020e957cbb66 *R/v0_annotation.R
ba9692b36c967c9ede60aa9cf2688676 *R/v0_clonality.R
91c75cd257a9f8b460bcb4effe09266d *R/v0_clustering.R
446bb5ccf33722564afd750b71148894 *R/v0_data_docs.R
92c4af8e49d321839c5fdee41ce5cb68 *R/v0_dimensions.R
2bc663b845e12ec6e7c8338b83a1b063 *R/v0_distance.R
943f2efdc277e3444d1a5496748a71cf *R/v0_diversity.R
5c27851bba24952cc53ec6d5d2f37b13 *R/v0_dynamics.R
2ef224e73eb896a1c1ff5a90d2ad2cc1 *R/v0_explore.R
e751fe6b2dbac6e60d801811b3cf40f2 *R/v0_filters.R
a05c090d98fd9e72fa077b46e95adfc6 *R/v0_gene_usage.R
66ca4d445e1af8020423a0e9da160659 *R/v0_gene_usage_analysis.R
9f00be0125bbce6965406e005be47db6 *R/v0_germline.R
121c0cb1045f31f61a27a1cd3350e65b *R/v0_immunr_data_format.R
186c660a2fa765e917e90a709e09fe5b *R/v0_info_theory.R
8c969d73a20256a2655a7f65b316a849 *R/v0_io.R
036a8080afd728995712c2dc78ed8934 *R/v0_io_parsers.R
554e64de8fcfaf410a65e1fa42bc35ec *R/v0_io_savers.R
0e0e7efcee45d0df64d5de542213a632 *R/v0_io_utility.R
eb4d525d5cced0ecbb22f7d7730cabd5 *R/v0_kmers.R
59e44c13ee9e32c215076cb740bd8c97 *R/v0_overlap.R
50f0ca9cfc04bd2c8c839e4b10dbd050 *R/v0_overlap_analysis.R
4306de13ac54fd9776a9d22137c3a570 *R/v0_phylip.R
c7a4e5dc61bbbcd58e903851bfd460a9 *R/v0_preprocessing.R
1f924f1f04fdb0167eb8f36ea38a83ba *R/v0_public.R
20917686f30aa55f7f03d24e04a5a25f *R/v0_sampling.R
857b1418c86a69292f2c19b0d641bc91 *R/v0_seqCluster.R
fcc50aa81f9e909c06a3a8c07c0ad4a1 *R/v0_shiny.R
b82d29509e31ff46b6fcf0e82ee43889 *R/v0_singlecell.R
31368fb496542643711176f3e5c3d745 *R/v0_somatic_hypermutation.R
5b171f415049ae47b0ee2d1d4dbae6a2 *R/v0_spectratyping.R
7e0aedf1328e20f72b0a80f2295418de *R/v0_tools.R
cd679348285f23a2099ba97634d3d01a *R/v0_vis.R
f7c85bf07f356754755093684e3b3281 *R/v1_aaa_commons_vis.R
ce83d6af40c7e3ce6b6e1af6f96b25ed *R/v1_aaa_registry_utils.R
d9460b76c3541da4c2eaa5a942e2dad5 *R/v1_clonality_airr.R
9ddc1d3d7e9d725be32d16092be1dc40 *R/v1_clonality_annotate.R
bfe743ca7785dac83cbd0984299d2102 *R/v1_clonality_base.R
5d304574f4fac84312edc54317fb7e43 *R/v1_diversity_airr.R
428a878ea6f75db2c2d7195e6f07327f *R/v1_diversity_vis.R
513faee9981078eae62f683a8fc381ee *R/v1_migration_updates.R
7472077fffcad592c6808dada0f5cfb7 *R/v1_migration_utils.R
8a197e6d3237a73f034910a6a68ec47c *R/v1_package.R
01605e9085adea3e992ef744fa676e32 *R/v1_public_airr.R
5274c7bba67ba921e7b447ee5480e861 *R/v1_public_vis.R
e03ad144f3fd09bfc73498a2b01e953b *R/v1_stats_airr.R
a7b22121697ba9e27d37f2744bdd5a0f *R/v1_stats_vis.R
682da95c9a99447541beebd4904bedb8 *R/wip-v1-planning.R
fc6669bd61f224742c9307d563c4c81b *R/zzz.R
d25444e164fb04987d6f47f6a0a82c4b *README.md
93b19f15b29a989d9b1c093722d7b6f4 *build/vignette.rds
00ae2aa3427adcc0d025a35ad5621d53 *data/aaproperties.rda
400a5198c3d7ced9c5208e60c335d72d *data/bcrdata.rda
ea5a2af608ae4caefa4bc532eda78d5c *data/genesegments.rda
9e42c72b10475df4177277725f4dab44 *data/immdata.rda
9683f2838e1064bb9f511fea6b953f62 *inst/doc/immunarch.Rmd
17ca61f0e864129934eb30a180df7b4e *inst/doc/immunarch.html
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332170ff9e10e7ccb5be6aeffc63d44c *inst/extdata/db/vdjdb.example.txt
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9e45583b294271871d1bd262d5629d44 *inst/extdata/sc/flu.csv.gz
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995b6c6c0492d7ce33bc98b30c42f33d *man/dbLoad.Rd
11ae1ad540635fc4458fe53213d07ab4 *man/dot-quant_column_choice.Rd
1a3df055c7d7106a421904de874f0aa7 *man/entropy.Rd
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bbf244b1569100e91798198106d09fee *man/geneUsage.Rd
8fdf445b8ff50e991e5f87a5a40bb175 *man/geneUsageAnalysis.Rd
84063f3f76f700a9d2e6da004c1e3eab *man/gene_segments.Rd
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787921230c6d0facabaec2f087d0e15c *man/getKmers.Rd
190654f21197d1a3649537dbb4b72eb8 *man/get_immunarch_news.Rd
1c7250ca7dbcfbb191a830f6e39022f2 *man/group_from_metadata.Rd
a82e6f228b80047048433b4eb27b4c86 *man/has_class.Rd
a40d1088aad1a39216391af19dae9370 *man/im_common_args.Rd
15d76de8ce608f47d73a0702349d4693 *man/immdata.Rd
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5cef3799558b8243346fec40b36388a3 *man/pubRepStatistics.Rd
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8f92e3e3ce2e10a632177948227564d0 *man/repOverlap.Rd
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62997572d553dacacd6d23a5a5c0fc85 *man/repSave.Rd
971c6d3d31cd0f5ea5ac796da8c10a4f *man/repSomaticHypermutation.Rd
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4e0690201ce0572e7300a777867554e4 *man/seqDist.Rd
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dadb620870075f5e474fb96df8f28513 *man/spectratype.Rd
352dac291715fcd04347e59945c9116d *man/split_to_kmers.Rd
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38a35cac7b7efc2478fcb53d0b9e9c84 *man/top.Rd
26b9d9a0d1409d803a2a690241cbbdf9 *man/trackClonotypes.Rd
d7dd0b57f2c4955537ec965ee53e5425 *man/vis.Rd
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93be8cbe582581314722fdefaef7694b *man/vis_public_frequencies.Rd
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69ea319e04809ad4052cd8ec680c0868 *src/RcppExports.cpp
d6fe6d2e88a8bda3a957fe8efaddc9cf *src/fill_functions.cpp
9683f2838e1064bb9f511fea6b953f62 *vignettes/immunarch.Rmd
e898bad98afd3e5ea5da49065e61861f *vignettes/immunarch_threads.Rmd
5423503e12c8ddfa1e2391c381919297 *vignettes/web_only_v0/BCRpipeline.Rmd
ec3d706ad215c2ec5c031cfa8f05cdc6 *vignettes/web_only_v0/clustering.Rmd
b0db12f05f331c04d430bd3703078538 *vignettes/web_only_v0/data.Rmd
45a9832919c1abe44b4136a6721b7a13 *vignettes/web_only_v0/introduction.Rmd
02ee8b9d8309ef34defa98fe15128945 *vignettes/web_only_v0/load_10x.Rmd
8fca640aa39c217377594e8fd5fed1dc *vignettes/web_only_v0/load_mixcr.Rmd
06315182c71454ff845f91ca4f30af84 *vignettes/web_only_v0/repFilter_v3.Rmd
408d22f509277d4577e6a7be6250a129 *vignettes/web_only_v0/v10_prop.Rmd
447235dd49a2fca86879e0ea923dce01 *vignettes/web_only_v0/v11_db.Rmd
853cc59c97c45593cd958bcd160cf49d *vignettes/web_only_v0/v21_singlecell.Rmd
bb7adef931060909ff400537b010d3c7 *vignettes/web_only_v0/v3_basic_analysis.Rmd
a5c0620bdbb3ae71ae3f1f5470ad9588 *vignettes/web_only_v0/v4_overlap.Rmd
4e3fcdbe732e40d88cfca27d9ac9f39a *vignettes/web_only_v0/v5_gene_usage.Rmd
791270834d0a14950f398f5bf3d77a80 *vignettes/web_only_v0/v6_diversity.Rmd
ee1baf5b0e8498d44e10f0086a03ca9d *vignettes/web_only_v0/v7_fixvis.Rmd
42cb79cc513ef5d6d6972480fc1fbf53 *vignettes/web_only_v0/v8_tracking.Rmd
406df3bc5e842e48ada9ac9c071ecce3 *vignettes/web_only_v0/v9_kmers.Rmd
