boot                    Estimate of confidence intervals of molecular
                        clock parameters with user-supplied set of
                        bootstrap trees
dater                   Estimate a time-scaled tree and fit a molecular
                        clock
gibbs_jitter            Sample node dates conditional on root time
                        using Gibbs sampling and date prior
goodnessOfFitPlot       Produce a goodness of fit plot
outlierLineages         Detect lineages with unusually large
                        evolutionary divergence under the fitted
                        treedater model
outlierTips             Detect terminal lineages with unusually large
                        evolutionary divergence under the fitted
                        treedater model
parboot                 Estimate of confidence intervals using
                        parametric bootstrap for molecular clock
                        dating.
plot.bootTreedater      Plots lineages through time and confidence
                        intervals estimated by bootstrap.
relaxedClockTest        Use parametric bootstrap to test if relaxed
                        clock offers improved fit to data.
rootToTipRegressionPlot
                        Plot evolutionary distance from root to sample
                        times and estimated internal node times and
                        regression lines
sampleYearsFromLabels   Compute a vector of numeric sample times from
                        labels in a sequence alignment or phylogeny
treedater-package       treedater fits a molecular clock to a
                        phylogenetic tree and estimates evolutionary
                        rates and times of common ancestry.
