Barchart.data           A Graphical Representation of Taxa Proportions
C.alpha.multinomial     C(alpha) - Optimal Test for Assessing
                        Multinomial Goodness of Fit Versus
                        Dirichlet-Multinomial Alternative
DM.MoM                  Method-of-Moments (MoM) Estimators of the
                        Dirichlet-Multinomial Parameters
DM.Rpart                Dirichlet-Multinomial RPart
Data.filter             A Data Filter
Dirichlet.multinomial   Generation of Dirichlet-Multinomial Random
                        Samples
Est.PI                  Estimate the Pi Vector
Gen.Alg                 Find Taxa Separating Two Groups using Genetic
                        Algorithm (GA)
Gen.Alg.Consensus       Find Taxa Separating Two Groups using Multiple
                        Genetic Algorithm's (GA) Consensus
HMP-package             Hypothesis Testing and Power Calculations for
                        Comparing Metagenomics Samples
Kullback.Leibler        Kullback Leibler
MC.Xdc.statistics       Size and Power for the Several-Sample DM
                        Parameter Test Comparison
MC.Xmc.statistics       Size and Power of Several Sample
                        RAD-Probability Mean Test Comparison
MC.Xmcupo.statistics    Size and Power of Several Sample
                        RAD-Probability Mean Test Comparisons: Unknown
                        Vector of Proportion
MC.Xoc.statistics       Size and Power of Several Sample-Overdispersion
                        Test Comparisons
MC.Xsc.statistics       Size and Power for the One Sample RAD
                        Probability-Mean Test Comparison
MC.ZT.statistics        Size and Power of Goodness of Fit Test:
                        Multinomial vs. Dirichlet-Multinomial
Multinomial             Generation of Multinomial Random Samples
Plot.MDS                Multidimensional Scaling Plot of Microbiome
                        Data
Plot.PI                 Plot the Pi Vector
Plot.RM.Barchart        Plot the Pi Vector for Repeated Measures
Plot.RM.Dotplot         Plot the Pi Vector for Repeated Measures
Test.Paired             Test Paired Data Sets
Xdc.sevsample           Likelihood-Ratio-Test Statistics: Several
                        Sample Dirichlet-Multinomial Test Comparison
Xmc.sevsample           Generalized Wald-type Statistics: Several
                        Sample RAD Probability-Mean Test Comparison
                        with a Known Common Vector
Xmcupo.effectsize       Effect Size for Xmcupo Statistic
Xmcupo.sevsample        Generalized Wald-type Statistics: Several
                        Sample RAD Probability-Mean Test Comparison
                        with an Unknown Common Vector
Xoc.sevsample           Likelihood-Ratio-Test Statistics: Several
                        Sample Overdispersion Test Comparison
Xsc.onesample           Generalized Wald-Type Statistics: One Sample
                        RAD Probability-Mean Test Comparison
dmrp_covars             Paper Covariate Set
dmrp_data               Paper Taxa Data Set
formatDataSets          Format Data
saliva                  Saliva Data Set
throat                  Throat Data Set
tongue                  Tongue Data Set
tonsils                 Palatine Tonsil Data Set
