xpose.xtras

xpose.xtras 0.2.0

New features

• xp_from_bbr() converts a ‘bbr’ model directly into an xp_xtras object.
• New parameter/covariate association system (add_cov_association(), prm_cov() family) with xplot_forest() / cov_forest() visualization; see the new parameter-associations vignette.
• cormat() visualizes the parameter correlation/covariance matrix, for both NONMEM and nlmixr2 models.
• catdv_vs_occ() and catdv_vs_ipred() add categorical DV diagnostic plots (observed-vs-predicted trend across occasions, and binned calibration).
• left_join_x() backfills missing variables into an xpdb via a coalescing left join.
• Default label overrides, plot watermarking, and a flexible save wrapper (set_default_labs(), add_watermark(), ggsave_xp()), configurable via set_xtras_options() and auto-applied on print/save. See the new plot-output vignette.
• patch_condn() corrects ‘xpose’s condition number calculation for multi-method NONMEM runs, applied automatically byas_xpdb_x()`.
• focus_function() / focus_qapply() now support output-generating functions (plots, tables), not just xpdb-transforming ones.
• New logLik(), AIC(), and BIC() methods for xpose_data and xpose_set objects.
• ind_plots_sample() plots a representative (optionally stratified) sample of individuals instead of the whole dataset.
• plot.xpose_data() runs a configurable batch of diagnostic plots in one call.
• process_preset() family saves and replays a reusable xpdb processing pipeline by name, optionally persisted across sessions.

Bug fixes

• set_dv_probs() no longer crashes when .problem is omitted.
• conflicted preferences are now re-applied regardless of package attach order, fixing spurious “found in 2 packages” errors.
• Fixed inconsistent ‘cli’ message coloring caused by a color-formatting helper being evaluated at install time instead of call time.
• Fixed a title/description typo in %p%.
• Fixed misleading default subtitle/caption labels on model-averaged plots, which previously reported statistics from just one of the averaged models.
• Fixed as_xpdb_x() / check_xpdb_x() erroring on xpose_data objects with no table data.
• Fixed xplot_pairs() silently ignoring a custom catcont_opts$other_fun, and removed an unreachable leftover duplicate-axis-label block in roc_by_mod().

xpose.xtras 0.1.4

• nlmixr2 example datasets replaced with on-demand nlmixr_example() / nlmixr2_example() to avoid loading nlmixr2est when not installed.

xpose.xtras 0.1.3

• Fix for nlmixr2 compatibility checks when nlmixr2est is not installed.

xpose.xtras 0.1.2

• Additional changes relevant to 0.1.1.

xpose.xtras 0.1.1

• Minor compatibility changes for nlmixr2 5.0

xpose.xtras 0.1.0

• Bugs regarding covariate plotting functions were resolved.
• nlmixr2 compatibility implemented
• ROC curve plots added
• Updated documentation and pkgdown site

xpose.xtras 0.0.3

• Patch to support ‘ggplot2’ 4.0.0 release.
• Bugfixes for ‘xpose’ related to ‘ggplot2’ also implemented in a backwards compatible way.
• Contact email changed.

xpose.xtras 0.0.2

• CRAN release planned

xpose.xtras 0.0.1

• Early post-development version
• Completed unit tests and ongoing fixes to bugs and documentation.