## ----include = FALSE---------------------------------------------------------- # Force limit to 2 cores for CRAN Sys.setenv("R_PARALLELLY_AVAILABLE_CORES" = "2") Sys.setenv("OMP_THREAD_LIMIT" = "2") Sys.setenv("TF_NUM_INTRAOP_THREADS" = "1") Sys.setenv("TF_NUM_INTEROP_THREADS" = "1") knitr::opts_chunk$set( collapse = TRUE, comment = "#>" ) ## ----setup-------------------------------------------------------------------- library(greta) ## ----first-use, eval = FALSE-------------------------------------------------- # install.packages("greta") # # library(greta) # x <- normal(0, 1) ## ----sitrep, eval = FALSE----------------------------------------------------- # greta_sitrep() ## ----smoke-test, eval = FALSE------------------------------------------------- # x <- normal(0, 1) # m <- model(x) # draws <- mcmc(m) # draws ## ----offline-override, eval = FALSE------------------------------------------- # # force offline mode: e.g. before greta detects the cache, or on a machine # # where you copied the cache over # Sys.setenv(UV_OFFLINE = "1") # # # force uv back online: for example to refresh the environment # Sys.setenv(UV_OFFLINE = "0") ## ----offline, eval = FALSE---------------------------------------------------- # # point at a specific Python binary # greta_set_python("path", path = "/opt/python-envs/greta/bin/python") # # # or point at the environment directory and let greta find the binary # greta_set_python("path", path = "/opt/python-envs/greta") # # # on Windows, an environment directory works the same way; greta looks for # # Scripts\\python.exe inside it # greta_set_python("path", path = "C:/python-envs/greta") ## ----offline-conda, eval = FALSE---------------------------------------------- # greta_set_python("conda", name = "greta-env-tf2") ## ----deps-spec, eval = FALSE-------------------------------------------------- # greta_deps_spec( # tf_version = "2.15.0", # tfp_version = "0.23.0", # python_version = "3.10" # ) ## ----deps-table, eval = FALSE------------------------------------------------- # View(greta_deps_tf_tfp) ## ----set-deps, eval = FALSE--------------------------------------------------- # greta_set_deps( # greta_deps_spec( # tf_version = "2.14.0", # tfp_version = "0.22.1", # python_version = "3.10" # ) # ) # # # clear the stored versions and return to greta's defaults # greta_remove("deps") ## ----install-deps, eval = FALSE----------------------------------------------- # install_greta_deps() ## ----use-conda, eval = FALSE-------------------------------------------------- # greta_set_python("conda") ## ----greta-set, eval = FALSE-------------------------------------------------- # # use the managed (uv) environment (the default) # greta_set_python() # # use the "greta-env-tf2" conda environment # greta_set_python("conda") # # use a specific Python # greta_set_python("path", path = "/path/to/python") # # clear the choice; resolve automatically # greta_reset_python() ## ----reticulate-python, eval = FALSE------------------------------------------ # Sys.setenv(RETICULATE_PYTHON = "/path/to/your/python") # library(greta) ## ----starting-over, eval = FALSE---------------------------------------------- # # everything at once (the default) -- asks for confirmation once, then # # removes everything it finds # greta_remove() # # the "greta-env-tf2" conda environment # greta_remove("env") # # the miniconda installation # greta_remove("miniconda") # # reticulate's uv cache # greta_remove("uv_cache") # # just the stored Python preference (from greta_set_python()) # greta_remove("preference") # # just the stored dependency versions (from greta_set_deps()) # greta_remove("deps") ## ----manual-conda, eval = FALSE----------------------------------------------- # reticulate::install_miniconda() # reticulate::conda_create( # envname = "greta-env-tf2", # python_version = "3.11" # ) # reticulate::conda_install( # envname = "greta-env-tf2", # packages = c( # "tensorflow-probability==0.23.0", # "tensorflow==2.15.1" # ) # )