Last updated on 2025-10-03 01:49:48 CEST.
Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
---|---|---|---|---|---|---|
r-devel-linux-x86_64-debian-clang | 1.2.1 | 707.00 | 414.72 | 1121.72 | ERROR | |
r-devel-linux-x86_64-debian-gcc | 1.2.1 | 588.81 | 390.58 | 979.39 | ERROR | |
r-devel-linux-x86_64-fedora-clang | 1.2.1 | 1721.87 | ERROR | |||
r-devel-linux-x86_64-fedora-gcc | 1.2.2 | 2399.33 | OK | |||
r-devel-windows-x86_64 | 1.2.1 | 799.00 | 660.00 | 1459.00 | ERROR | |
r-patched-linux-x86_64 | 1.2.1 | 825.66 | 515.82 | 1341.48 | ERROR | |
r-release-linux-x86_64 | 1.2.1 | 821.77 | 507.99 | 1329.76 | ERROR | |
r-release-macos-arm64 | 1.2.1 | 277.00 | OK | |||
r-release-macos-x86_64 | 1.2.2 | 556.00 | OK | |||
r-release-windows-x86_64 | 1.2.1 | 817.00 | 520.00 | 1337.00 | ERROR | |
r-oldrel-macos-arm64 | 1.2.1 | 299.00 | NOTE | |||
r-oldrel-macos-x86_64 | 1.2.2 | 578.00 | NOTE | |||
r-oldrel-windows-x86_64 | 1.2.1 | 872.00 | 654.00 | 1526.00 | ERROR |
Version: 1.2.1
Check: tests
Result: ERROR
Running ‘testthat.R’ [18s/21s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
>
> library(testthat)
> library(hmde)
>
> test_check("hmde")
SAMPLING FOR MODEL 'constant_single_ind' NOW (CHAIN 1).
Chain 1:
Chain 1: Gradient evaluation took 3e-05 seconds
Chain 1: 1000 transitions using 10 leapfrog steps per transition would take 0.3 seconds.
Chain 1: Adjust your expectations accordingly!
Chain 1:
Chain 1:
Chain 1: WARNING: No variance estimation is
Chain 1: performed for num_warmup < 20
Chain 1:
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Chain 1:
Chain 1: Elapsed Time: 0 seconds (Warm-up)
Chain 1: 0 seconds (Sampling)
Chain 1: 0 seconds (Total)
Chain 1:
SAMPLING FOR MODEL 'canham_multi_ind' NOW (CHAIN 1).
Chain 1:
Chain 1: Gradient evaluation took 0.005436 seconds
Chain 1: 1000 transitions using 10 leapfrog steps per transition would take 54.36 seconds.
Chain 1: Adjust your expectations accordingly!
Chain 1:
Chain 1:
Chain 1: WARNING: No variance estimation is
Chain 1: performed for num_warmup < 20
Chain 1:
Chain 1: Iteration: 1 / 20 [ 5%] (Warmup)
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Chain 1:
Chain 1: Elapsed Time: 1.905 seconds (Warm-up)
Chain 1: 0.033 seconds (Sampling)
Chain 1: 1.938 seconds (Total)
Chain 1:
SAMPLING FOR MODEL 'canham_multi_ind' NOW (CHAIN 2).
Chain 2:
Chain 2: Gradient evaluation took 0.001267 seconds
Chain 2: 1000 transitions using 10 leapfrog steps per transition would take 12.67 seconds.
Chain 2: Adjust your expectations accordingly!
Chain 2:
Chain 2:
Chain 2: WARNING: No variance estimation is
Chain 2: performed for num_warmup < 20
Chain 2:
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Chain 2:
Chain 2: Elapsed Time: 0.196 seconds (Warm-up)
Chain 2: 0.094 seconds (Sampling)
Chain 2: 0.29 seconds (Total)
Chain 2:
SAMPLING FOR MODEL 'constant_single_ind' NOW (CHAIN 1).
Chain 1:
Chain 1: Gradient evaluation took 1.4e-05 seconds
Chain 1: 1000 transitions using 10 leapfrog steps per transition would take 0.14 seconds.
Chain 1: Adjust your expectations accordingly!
Chain 1:
Chain 1:
Chain 1: Iteration: 1 / 1000 [ 0%] (Warmup)
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Chain 1:
Chain 1: Elapsed Time: 0.263 seconds (Warm-up)
Chain 1: 0.635 seconds (Sampling)
Chain 1: 0.898 seconds (Total)
Chain 1:
SAMPLING FOR MODEL 'constant_multi_ind' NOW (CHAIN 1).
Chain 1:
Chain 1: Gradient evaluation took 2.7e-05 seconds
Chain 1: 1000 transitions using 10 leapfrog steps per transition would take 0.27 seconds.
Chain 1: Adjust your expectations accordingly!
Chain 1:
Chain 1:
Chain 1: WARNING: No variance estimation is
Chain 1: performed for num_warmup < 20
Chain 1:
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Chain 1:
Chain 1: Elapsed Time: 0.001 seconds (Warm-up)
Chain 1: 0 seconds (Sampling)
Chain 1: 0.001 seconds (Total)
Chain 1:
SAMPLING FOR MODEL 'constant_multi_ind' NOW (CHAIN 2).
Chain 2:
Chain 2: Gradient evaluation took 1.4e-05 seconds
Chain 2: 1000 transitions using 10 leapfrog steps per transition would take 0.14 seconds.
Chain 2: Adjust your expectations accordingly!
Chain 2:
Chain 2:
Chain 2: WARNING: No variance estimation is
Chain 2: performed for num_warmup < 20
Chain 2:
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Chain 2:
Chain 2: Elapsed Time: 0.001 seconds (Warm-up)
Chain 2: 0.008 seconds (Sampling)
Chain 2: 0.009 seconds (Total)
Chain 2:
SAMPLING FOR MODEL 'vb_single_ind' NOW (CHAIN 1).
Chain 1:
Chain 1: Gradient evaluation took 4.3e-05 seconds
Chain 1: 1000 transitions using 10 leapfrog steps per transition would take 0.43 seconds.
Chain 1: Adjust your expectations accordingly!
Chain 1:
Chain 1:
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Chain 1:
Chain 1: Elapsed Time: 0.6 seconds (Warm-up)
Chain 1: 1.351 seconds (Sampling)
Chain 1: 1.951 seconds (Total)
Chain 1:
SAMPLING FOR MODEL 'vb_multi_ind' NOW (CHAIN 1).
Chain 1:
Chain 1: Gradient evaluation took 0.000224 seconds
Chain 1: 1000 transitions using 10 leapfrog steps per transition would take 2.24 seconds.
Chain 1: Adjust your expectations accordingly!
Chain 1:
Chain 1:
Chain 1: WARNING: No variance estimation is
Chain 1: performed for num_warmup < 20
Chain 1:
Chain 1: Iteration: 1 / 20 [ 5%] (Warmup)
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Chain 1:
Chain 1: Elapsed Time: 0.002 seconds (Warm-up)
Chain 1: 0.051 seconds (Sampling)
Chain 1: 0.053 seconds (Total)
Chain 1:
SAMPLING FOR MODEL 'vb_multi_ind' NOW (CHAIN 2).
Chain 2:
Chain 2: Gradient evaluation took 2.6e-05 seconds
Chain 2: 1000 transitions using 10 leapfrog steps per transition would take 0.26 seconds.
Chain 2: Adjust your expectations accordingly!
Chain 2:
Chain 2:
Chain 2: WARNING: No variance estimation is
Chain 2: performed for num_warmup < 20
Chain 2:
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Chain 2:
Chain 2: Elapsed Time: 0.006 seconds (Warm-up)
Chain 2: 0.028 seconds (Sampling)
Chain 2: 0.034 seconds (Total)
Chain 2:
SAMPLING FOR MODEL 'constant_multi_ind' NOW (CHAIN 1).
Chain 1:
Chain 1: Gradient evaluation took 5e-05 seconds
Chain 1: 1000 transitions using 10 leapfrog steps per transition would take 0.5 seconds.
Chain 1: Adjust your expectations accordingly!
Chain 1:
Chain 1:
Chain 1: WARNING: There aren't enough warmup iterations to fit the
Chain 1: three stages of adaptation as currently configured.
Chain 1: Reducing each adaptation stage to 15%/75%/10% of
Chain 1: the given number of warmup iterations:
Chain 1: init_buffer = 3
Chain 1: adapt_window = 20
Chain 1: term_buffer = 2
Chain 1:
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Chain 1:
Chain 1: Elapsed Time: 0.19 seconds (Warm-up)
Chain 1: 0.056 seconds (Sampling)
Chain 1: 0.246 seconds (Total)
Chain 1:
SAMPLING FOR MODEL 'constant_multi_ind' NOW (CHAIN 1).
Chain 1:
Chain 1: Gradient evaluation took 4.8e-05 seconds
Chain 1: 1000 transitions using 10 leapfrog steps per transition would take 0.48 seconds.
Chain 1: Adjust your expectations accordingly!
Chain 1:
Chain 1:
Chain 1: WARNING: There aren't enough warmup iterations to fit the
Chain 1: three stages of adaptation as currently configured.
Chain 1: Reducing each adaptation stage to 15%/75%/10% of
Chain 1: the given number of warmup iterations:
Chain 1: init_buffer = 3
Chain 1: adapt_window = 20
Chain 1: term_buffer = 2
Chain 1:
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Chain 1:
Chain 1: Elapsed Time: 0.055 seconds (Warm-up)
Chain 1: 0.04 seconds (Sampling)
Chain 1: 0.095 seconds (Total)
Chain 1:
[ FAIL 4 | WARN 0 | SKIP 0 | PASS 85 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-hmde_plot_de_pieces.R:17:3'): Execution and output: plot_de_pieces function ──
`plot` does not have names.
── Failure ('test-hmde_plot_de_pieces.R:21:3'): Execution and output: plot_de_pieces function ──
`plot` has type 'object', not 'list'.
── Failure ('test-hmde_plot_obs_est_inds.R:5:3'): Execution and output: plot_obs_est_inds function ──
`plot` does not have names.
── Failure ('test-hmde_plot_obs_est_inds.R:9:3'): Execution and output: plot_obs_est_inds function ──
`plot` has type 'object', not 'list'.
[ FAIL 4 | WARN 0 | SKIP 0 | PASS 85 ]
Error: Test failures
Execution halted
Flavor: r-devel-linux-x86_64-debian-clang
Version: 1.2.1
Check: tests
Result: ERROR
Running ‘testthat.R’ [15s/19s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
>
> library(testthat)
> library(hmde)
>
> test_check("hmde")
SAMPLING FOR MODEL 'constant_single_ind' NOW (CHAIN 1).
Chain 1:
Chain 1: Gradient evaluation took 1.2e-05 seconds
Chain 1: 1000 transitions using 10 leapfrog steps per transition would take 0.12 seconds.
Chain 1: Adjust your expectations accordingly!
Chain 1:
Chain 1:
Chain 1: WARNING: No variance estimation is
Chain 1: performed for num_warmup < 20
Chain 1:
Chain 1: Iteration: 1 / 20 [ 5%] (Warmup)
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Chain 1: Iteration: 20 / 20 [100%] (Sampling)
Chain 1:
Chain 1: Elapsed Time: 0 seconds (Warm-up)
Chain 1: 0 seconds (Sampling)
Chain 1: 0 seconds (Total)
Chain 1:
SAMPLING FOR MODEL 'canham_multi_ind' NOW (CHAIN 1).
Chain 1:
Chain 1: Gradient evaluation took 0.000961 seconds
Chain 1: 1000 transitions using 10 leapfrog steps per transition would take 9.61 seconds.
Chain 1: Adjust your expectations accordingly!
Chain 1:
Chain 1:
Chain 1: WARNING: No variance estimation is
Chain 1: performed for num_warmup < 20
Chain 1:
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Chain 1:
Chain 1: Elapsed Time: 0.146 seconds (Warm-up)
Chain 1: 1.799 seconds (Sampling)
Chain 1: 1.945 seconds (Total)
Chain 1:
SAMPLING FOR MODEL 'canham_multi_ind' NOW (CHAIN 2).
Chain 2:
Chain 2: Gradient evaluation took 0.000827 seconds
Chain 2: 1000 transitions using 10 leapfrog steps per transition would take 8.27 seconds.
Chain 2: Adjust your expectations accordingly!
Chain 2:
Chain 2:
Chain 2: WARNING: No variance estimation is
Chain 2: performed for num_warmup < 20
Chain 2:
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Chain 2:
Chain 2: Elapsed Time: 0.729 seconds (Warm-up)
Chain 2: 0.02 seconds (Sampling)
Chain 2: 0.749 seconds (Total)
Chain 2:
SAMPLING FOR MODEL 'constant_single_ind' NOW (CHAIN 1).
Chain 1:
Chain 1: Gradient evaluation took 1e-05 seconds
Chain 1: 1000 transitions using 10 leapfrog steps per transition would take 0.1 seconds.
Chain 1: Adjust your expectations accordingly!
Chain 1:
Chain 1:
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Chain 1:
Chain 1: Elapsed Time: 0.163 seconds (Warm-up)
Chain 1: 0.244 seconds (Sampling)
Chain 1: 0.407 seconds (Total)
Chain 1:
SAMPLING FOR MODEL 'constant_multi_ind' NOW (CHAIN 1).
Chain 1:
Chain 1: Gradient evaluation took 1.6e-05 seconds
Chain 1: 1000 transitions using 10 leapfrog steps per transition would take 0.16 seconds.
Chain 1: Adjust your expectations accordingly!
Chain 1:
Chain 1:
Chain 1: WARNING: No variance estimation is
Chain 1: performed for num_warmup < 20
Chain 1:
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Chain 1: Elapsed Time: 0.002 seconds (Warm-up)
Chain 1: 0.002 seconds (Sampling)
Chain 1: 0.004 seconds (Total)
Chain 1:
SAMPLING FOR MODEL 'constant_multi_ind' NOW (CHAIN 2).
Chain 2:
Chain 2: Gradient evaluation took 7e-06 seconds
Chain 2: 1000 transitions using 10 leapfrog steps per transition would take 0.07 seconds.
Chain 2: Adjust your expectations accordingly!
Chain 2:
Chain 2:
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Chain 2: performed for num_warmup < 20
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Chain 2:
Chain 2: Elapsed Time: 0.001 seconds (Warm-up)
Chain 2: 0.003 seconds (Sampling)
Chain 2: 0.004 seconds (Total)
Chain 2:
SAMPLING FOR MODEL 'vb_single_ind' NOW (CHAIN 1).
Chain 1:
Chain 1: Gradient evaluation took 2.3e-05 seconds
Chain 1: 1000 transitions using 10 leapfrog steps per transition would take 0.23 seconds.
Chain 1: Adjust your expectations accordingly!
Chain 1:
Chain 1:
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Chain 1: 1.903 seconds (Total)
Chain 1:
SAMPLING FOR MODEL 'vb_multi_ind' NOW (CHAIN 1).
Chain 1:
Chain 1: Gradient evaluation took 5.1e-05 seconds
Chain 1: 1000 transitions using 10 leapfrog steps per transition would take 0.51 seconds.
Chain 1: Adjust your expectations accordingly!
Chain 1:
Chain 1:
Chain 1: WARNING: No variance estimation is
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Chain 1: 0.042 seconds (Total)
Chain 1:
SAMPLING FOR MODEL 'vb_multi_ind' NOW (CHAIN 2).
Chain 2:
Chain 2: Gradient evaluation took 3.5e-05 seconds
Chain 2: 1000 transitions using 10 leapfrog steps per transition would take 0.35 seconds.
Chain 2: Adjust your expectations accordingly!
Chain 2:
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Chain 2:
SAMPLING FOR MODEL 'constant_multi_ind' NOW (CHAIN 1).
Chain 1:
Chain 1: Gradient evaluation took 7.1e-05 seconds
Chain 1: 1000 transitions using 10 leapfrog steps per transition would take 0.71 seconds.
Chain 1: Adjust your expectations accordingly!
Chain 1:
Chain 1:
Chain 1: WARNING: There aren't enough warmup iterations to fit the
Chain 1: three stages of adaptation as currently configured.
Chain 1: Reducing each adaptation stage to 15%/75%/10% of
Chain 1: the given number of warmup iterations:
Chain 1: init_buffer = 3
Chain 1: adapt_window = 20
Chain 1: term_buffer = 2
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Chain 1:
SAMPLING FOR MODEL 'constant_multi_ind' NOW (CHAIN 1).
Chain 1:
Chain 1: Gradient evaluation took 3.2e-05 seconds
Chain 1: 1000 transitions using 10 leapfrog steps per transition would take 0.32 seconds.
Chain 1: Adjust your expectations accordingly!
Chain 1:
Chain 1:
Chain 1: WARNING: There aren't enough warmup iterations to fit the
Chain 1: three stages of adaptation as currently configured.
Chain 1: Reducing each adaptation stage to 15%/75%/10% of
Chain 1: the given number of warmup iterations:
Chain 1: init_buffer = 3
Chain 1: adapt_window = 20
Chain 1: term_buffer = 2
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Chain 1:
Chain 1: Elapsed Time: 0.151 seconds (Warm-up)
Chain 1: 0.096 seconds (Sampling)
Chain 1: 0.247 seconds (Total)
Chain 1:
[ FAIL 4 | WARN 0 | SKIP 0 | PASS 85 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-hmde_plot_de_pieces.R:17:3'): Execution and output: plot_de_pieces function ──
`plot` does not have names.
── Failure ('test-hmde_plot_de_pieces.R:21:3'): Execution and output: plot_de_pieces function ──
`plot` has type 'object', not 'list'.
── Failure ('test-hmde_plot_obs_est_inds.R:5:3'): Execution and output: plot_obs_est_inds function ──
`plot` does not have names.
── Failure ('test-hmde_plot_obs_est_inds.R:9:3'): Execution and output: plot_obs_est_inds function ──
`plot` has type 'object', not 'list'.
[ FAIL 4 | WARN 0 | SKIP 0 | PASS 85 ]
Error: Test failures
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 1.2.1
Check: tests
Result: ERROR
Running ‘testthat.R’ [27s/60s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
>
> library(testthat)
> library(hmde)
>
> test_check("hmde")
SAMPLING FOR MODEL 'constant_single_ind' NOW (CHAIN 1).
Chain 1:
Chain 1: Gradient evaluation took 3.5e-05 seconds
Chain 1: 1000 transitions using 10 leapfrog steps per transition would take 0.35 seconds.
Chain 1: Adjust your expectations accordingly!
Chain 1:
Chain 1:
Chain 1: WARNING: No variance estimation is
Chain 1: performed for num_warmup < 20
Chain 1:
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Chain 1:
Chain 1: Elapsed Time: 0 seconds (Warm-up)
Chain 1: 0 seconds (Sampling)
Chain 1: 0 seconds (Total)
Chain 1:
SAMPLING FOR MODEL 'canham_multi_ind' NOW (CHAIN 1).
Chain 1:
Chain 1: Gradient evaluation took 0.006167 seconds
Chain 1: 1000 transitions using 10 leapfrog steps per transition would take 61.67 seconds.
Chain 1: Adjust your expectations accordingly!
Chain 1:
Chain 1:
Chain 1: WARNING: No variance estimation is
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Chain 1:
Chain 1: Elapsed Time: 0.679 seconds (Warm-up)
Chain 1: 3.662 seconds (Sampling)
Chain 1: 4.341 seconds (Total)
Chain 1:
SAMPLING FOR MODEL 'canham_multi_ind' NOW (CHAIN 2).
Chain 2:
Chain 2: Gradient evaluation took 0.006045 seconds
Chain 2: 1000 transitions using 10 leapfrog steps per transition would take 60.45 seconds.
Chain 2: Adjust your expectations accordingly!
Chain 2:
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Chain 2: Elapsed Time: 0.393 seconds (Warm-up)
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Chain 2: 1.137 seconds (Total)
Chain 2:
SAMPLING FOR MODEL 'constant_single_ind' NOW (CHAIN 1).
Chain 1:
Chain 1: Gradient evaluation took 1.7e-05 seconds
Chain 1: 1000 transitions using 10 leapfrog steps per transition would take 0.17 seconds.
Chain 1: Adjust your expectations accordingly!
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Chain 1:
SAMPLING FOR MODEL 'constant_multi_ind' NOW (CHAIN 1).
Chain 1:
Chain 1: Gradient evaluation took 5.4e-05 seconds
Chain 1: 1000 transitions using 10 leapfrog steps per transition would take 0.54 seconds.
Chain 1: Adjust your expectations accordingly!
Chain 1:
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Chain 1:
SAMPLING FOR MODEL 'constant_multi_ind' NOW (CHAIN 2).
Chain 2:
Chain 2: Gradient evaluation took 1.4e-05 seconds
Chain 2: 1000 transitions using 10 leapfrog steps per transition would take 0.14 seconds.
Chain 2: Adjust your expectations accordingly!
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Chain 2: 0.065 seconds (Sampling)
Chain 2: 0.073 seconds (Total)
Chain 2:
SAMPLING FOR MODEL 'vb_single_ind' NOW (CHAIN 1).
Chain 1:
Chain 1: Gradient evaluation took 2.9e-05 seconds
Chain 1: 1000 transitions using 10 leapfrog steps per transition would take 0.29 seconds.
Chain 1: Adjust your expectations accordingly!
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Chain 1:
Chain 1: Elapsed Time: 2.58 seconds (Warm-up)
Chain 1: 2.398 seconds (Sampling)
Chain 1: 4.978 seconds (Total)
Chain 1:
SAMPLING FOR MODEL 'vb_multi_ind' NOW (CHAIN 1).
Chain 1:
Chain 1: Gradient evaluation took 8.3e-05 seconds
Chain 1: 1000 transitions using 10 leapfrog steps per transition would take 0.83 seconds.
Chain 1: Adjust your expectations accordingly!
Chain 1:
Chain 1:
Chain 1: WARNING: No variance estimation is
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Chain 1:
SAMPLING FOR MODEL 'vb_multi_ind' NOW (CHAIN 2).
Chain 2:
Chain 2: Gradient evaluation took 7.6e-05 seconds
Chain 2: 1000 transitions using 10 leapfrog steps per transition would take 0.76 seconds.
Chain 2: Adjust your expectations accordingly!
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Chain 2:
SAMPLING FOR MODEL 'constant_multi_ind' NOW (CHAIN 1).
Chain 1:
Chain 1: Gradient evaluation took 6.1e-05 seconds
Chain 1: 1000 transitions using 10 leapfrog steps per transition would take 0.61 seconds.
Chain 1: Adjust your expectations accordingly!
Chain 1:
Chain 1:
Chain 1: WARNING: There aren't enough warmup iterations to fit the
Chain 1: three stages of adaptation as currently configured.
Chain 1: Reducing each adaptation stage to 15%/75%/10% of
Chain 1: the given number of warmup iterations:
Chain 1: init_buffer = 3
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Chain 1: term_buffer = 2
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Chain 1: 0.341 seconds (Total)
Chain 1:
SAMPLING FOR MODEL 'constant_multi_ind' NOW (CHAIN 1).
Chain 1:
Chain 1: Gradient evaluation took 6.6e-05 seconds
Chain 1: 1000 transitions using 10 leapfrog steps per transition would take 0.66 seconds.
Chain 1: Adjust your expectations accordingly!
Chain 1:
Chain 1:
Chain 1: WARNING: There aren't enough warmup iterations to fit the
Chain 1: three stages of adaptation as currently configured.
Chain 1: Reducing each adaptation stage to 15%/75%/10% of
Chain 1: the given number of warmup iterations:
Chain 1: init_buffer = 3
Chain 1: adapt_window = 20
Chain 1: term_buffer = 2
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Chain 1: Elapsed Time: 0.313 seconds (Warm-up)
Chain 1: 0.17 seconds (Sampling)
Chain 1: 0.483 seconds (Total)
Chain 1:
[ FAIL 4 | WARN 0 | SKIP 0 | PASS 85 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-hmde_plot_de_pieces.R:17:3'): Execution and output: plot_de_pieces function ──
`plot` does not have names.
── Failure ('test-hmde_plot_de_pieces.R:21:3'): Execution and output: plot_de_pieces function ──
`plot` has type 'object', not 'list'.
── Failure ('test-hmde_plot_obs_est_inds.R:5:3'): Execution and output: plot_obs_est_inds function ──
`plot` does not have names.
── Failure ('test-hmde_plot_obs_est_inds.R:9:3'): Execution and output: plot_obs_est_inds function ──
`plot` has type 'object', not 'list'.
[ FAIL 4 | WARN 0 | SKIP 0 | PASS 85 ]
Error: Test failures
Execution halted
Flavor: r-devel-linux-x86_64-fedora-clang
Version: 1.2.1
Check: tests
Result: ERROR
Running 'testthat.R' [20s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
>
> library(testthat)
> library(hmde)
>
> test_check("hmde")
SAMPLING FOR MODEL 'constant_single_ind' NOW (CHAIN 1).
Chain 1:
Chain 1: Gradient evaluation took 7e-05 seconds
Chain 1: 1000 transitions using 10 leapfrog steps per transition would take 0.7 seconds.
Chain 1: Adjust your expectations accordingly!
Chain 1:
Chain 1:
Chain 1: WARNING: No variance estimation is
Chain 1: performed for num_warmup < 20
Chain 1:
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Chain 1: Iteration: 20 / 20 [100%] (Sampling)
Chain 1:
Chain 1: Elapsed Time: 0 seconds (Warm-up)
Chain 1: 0 seconds (Sampling)
Chain 1: 0 seconds (Total)
Chain 1:
SAMPLING FOR MODEL 'canham_multi_ind' NOW (CHAIN 1).
Chain 1:
Chain 1: Gradient evaluation took 0.00309 seconds
Chain 1: 1000 transitions using 10 leapfrog steps per transition would take 30.9 seconds.
Chain 1: Adjust your expectations accordingly!
Chain 1:
Chain 1:
Chain 1: WARNING: No variance estimation is
Chain 1: performed for num_warmup < 20
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Chain 1: Gradient evaluation took 5.2e-05 seconds
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Chain 1:
Chain 1:
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Chain 1: three stages of adaptation as currently configured.
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SAMPLING FOR MODEL 'constant_multi_ind' NOW (CHAIN 1).
Chain 1:
Chain 1: Gradient evaluation took 4.6e-05 seconds
Chain 1: 1000 transitions using 10 leapfrog steps per transition would take 0.46 seconds.
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Chain 1:
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[ FAIL 4 | WARN 0 | SKIP 0 | PASS 85 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-hmde_plot_de_pieces.R:17:3'): Execution and output: plot_de_pieces function ──
`plot` does not have names.
── Failure ('test-hmde_plot_de_pieces.R:21:3'): Execution and output: plot_de_pieces function ──
`plot` has type 'object', not 'list'.
── Failure ('test-hmde_plot_obs_est_inds.R:5:3'): Execution and output: plot_obs_est_inds function ──
`plot` does not have names.
── Failure ('test-hmde_plot_obs_est_inds.R:9:3'): Execution and output: plot_obs_est_inds function ──
`plot` has type 'object', not 'list'.
[ FAIL 4 | WARN 0 | SKIP 0 | PASS 85 ]
Error: Test failures
Execution halted
Flavor: r-devel-windows-x86_64
Version: 1.2.1
Check: tests
Result: ERROR
Running ‘testthat.R’ [21s/24s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
>
> library(testthat)
> library(hmde)
>
> test_check("hmde")
SAMPLING FOR MODEL 'constant_single_ind' NOW (CHAIN 1).
Chain 1:
Chain 1: Gradient evaluation took 1e-05 seconds
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Chain 1: Gradient evaluation took 0.001473 seconds
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SAMPLING FOR MODEL 'canham_multi_ind' NOW (CHAIN 2).
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Chain 2: Gradient evaluation took 0.001291 seconds
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SAMPLING FOR MODEL 'constant_single_ind' NOW (CHAIN 1).
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SAMPLING FOR MODEL 'constant_multi_ind' NOW (CHAIN 1).
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Chain 1: Gradient evaluation took 2e-05 seconds
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Chain 1: Gradient evaluation took 2.5e-05 seconds
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Chain 1: Gradient evaluation took 7.4e-05 seconds
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Chain 1:
Chain 1: Elapsed Time: 0.071 seconds (Warm-up)
Chain 1: 0.06 seconds (Sampling)
Chain 1: 0.131 seconds (Total)
Chain 1:
SAMPLING FOR MODEL 'constant_multi_ind' NOW (CHAIN 1).
Chain 1:
Chain 1: Gradient evaluation took 4.7e-05 seconds
Chain 1: 1000 transitions using 10 leapfrog steps per transition would take 0.47 seconds.
Chain 1: Adjust your expectations accordingly!
Chain 1:
Chain 1:
Chain 1: WARNING: There aren't enough warmup iterations to fit the
Chain 1: three stages of adaptation as currently configured.
Chain 1: Reducing each adaptation stage to 15%/75%/10% of
Chain 1: the given number of warmup iterations:
Chain 1: init_buffer = 3
Chain 1: adapt_window = 20
Chain 1: term_buffer = 2
Chain 1:
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Chain 1:
Chain 1: Elapsed Time: 0.066 seconds (Warm-up)
Chain 1: 0.05 seconds (Sampling)
Chain 1: 0.116 seconds (Total)
Chain 1:
[ FAIL 4 | WARN 0 | SKIP 0 | PASS 85 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-hmde_plot_de_pieces.R:17:3'): Execution and output: plot_de_pieces function ──
`plot` does not have names.
── Failure ('test-hmde_plot_de_pieces.R:21:3'): Execution and output: plot_de_pieces function ──
`plot` has type 'object', not 'list'.
── Failure ('test-hmde_plot_obs_est_inds.R:5:3'): Execution and output: plot_obs_est_inds function ──
`plot` does not have names.
── Failure ('test-hmde_plot_obs_est_inds.R:9:3'): Execution and output: plot_obs_est_inds function ──
`plot` has type 'object', not 'list'.
[ FAIL 4 | WARN 0 | SKIP 0 | PASS 85 ]
Error: Test failures
Execution halted
Flavor: r-patched-linux-x86_64
Version: 1.2.1
Check: tests
Result: ERROR
Running ‘testthat.R’ [18s/22s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
>
> library(testthat)
> library(hmde)
>
> test_check("hmde")
SAMPLING FOR MODEL 'constant_single_ind' NOW (CHAIN 1).
Chain 1:
Chain 1: Gradient evaluation took 1e-05 seconds
Chain 1: 1000 transitions using 10 leapfrog steps per transition would take 0.1 seconds.
Chain 1: Adjust your expectations accordingly!
Chain 1:
Chain 1:
Chain 1: WARNING: No variance estimation is
Chain 1: performed for num_warmup < 20
Chain 1:
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Chain 1:
Chain 1: Elapsed Time: 0 seconds (Warm-up)
Chain 1: 0 seconds (Sampling)
Chain 1: 0 seconds (Total)
Chain 1:
SAMPLING FOR MODEL 'canham_multi_ind' NOW (CHAIN 1).
Chain 1:
Chain 1: Gradient evaluation took 0.001448 seconds
Chain 1: 1000 transitions using 10 leapfrog steps per transition would take 14.48 seconds.
Chain 1: Adjust your expectations accordingly!
Chain 1:
Chain 1:
Chain 1: WARNING: No variance estimation is
Chain 1: performed for num_warmup < 20
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Chain 1:
Chain 1: Elapsed Time: 0.302 seconds (Warm-up)
Chain 1: 0.203 seconds (Sampling)
Chain 1: 0.505 seconds (Total)
Chain 1:
SAMPLING FOR MODEL 'canham_multi_ind' NOW (CHAIN 2).
Chain 2:
Chain 2: Gradient evaluation took 0.001211 seconds
Chain 2: 1000 transitions using 10 leapfrog steps per transition would take 12.11 seconds.
Chain 2: Adjust your expectations accordingly!
Chain 2:
Chain 2:
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Chain 2:
Chain 2: Elapsed Time: 1.384 seconds (Warm-up)
Chain 2: 0.029 seconds (Sampling)
Chain 2: 1.413 seconds (Total)
Chain 2:
SAMPLING FOR MODEL 'constant_single_ind' NOW (CHAIN 1).
Chain 1:
Chain 1: Gradient evaluation took 1e-05 seconds
Chain 1: 1000 transitions using 10 leapfrog steps per transition would take 0.1 seconds.
Chain 1: Adjust your expectations accordingly!
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Chain 1: Elapsed Time: 0.293 seconds (Warm-up)
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Chain 1:
SAMPLING FOR MODEL 'constant_multi_ind' NOW (CHAIN 1).
Chain 1:
Chain 1: Gradient evaluation took 1.8e-05 seconds
Chain 1: 1000 transitions using 10 leapfrog steps per transition would take 0.18 seconds.
Chain 1: Adjust your expectations accordingly!
Chain 1:
Chain 1:
Chain 1: WARNING: No variance estimation is
Chain 1: performed for num_warmup < 20
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Chain 1:
SAMPLING FOR MODEL 'constant_multi_ind' NOW (CHAIN 2).
Chain 2:
Chain 2: Gradient evaluation took 1.2e-05 seconds
Chain 2: 1000 transitions using 10 leapfrog steps per transition would take 0.12 seconds.
Chain 2: Adjust your expectations accordingly!
Chain 2:
Chain 2:
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Chain 2: Elapsed Time: 0.001 seconds (Warm-up)
Chain 2: 0 seconds (Sampling)
Chain 2: 0.001 seconds (Total)
Chain 2:
SAMPLING FOR MODEL 'vb_single_ind' NOW (CHAIN 1).
Chain 1:
Chain 1: Gradient evaluation took 2.6e-05 seconds
Chain 1: 1000 transitions using 10 leapfrog steps per transition would take 0.26 seconds.
Chain 1: Adjust your expectations accordingly!
Chain 1:
Chain 1:
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Chain 1:
Chain 1: Elapsed Time: 0.922 seconds (Warm-up)
Chain 1: 1.626 seconds (Sampling)
Chain 1: 2.548 seconds (Total)
Chain 1:
SAMPLING FOR MODEL 'vb_multi_ind' NOW (CHAIN 1).
Chain 1:
Chain 1: Gradient evaluation took 7.4e-05 seconds
Chain 1: 1000 transitions using 10 leapfrog steps per transition would take 0.74 seconds.
Chain 1: Adjust your expectations accordingly!
Chain 1:
Chain 1:
Chain 1: WARNING: No variance estimation is
Chain 1: performed for num_warmup < 20
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Chain 1: 0.027 seconds (Sampling)
Chain 1: 0.031 seconds (Total)
Chain 1:
SAMPLING FOR MODEL 'vb_multi_ind' NOW (CHAIN 2).
Chain 2:
Chain 2: Gradient evaluation took 4.9e-05 seconds
Chain 2: 1000 transitions using 10 leapfrog steps per transition would take 0.49 seconds.
Chain 2: Adjust your expectations accordingly!
Chain 2:
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Chain 2: 0.01 seconds (Total)
Chain 2:
SAMPLING FOR MODEL 'constant_multi_ind' NOW (CHAIN 1).
Chain 1:
Chain 1: Gradient evaluation took 4.6e-05 seconds
Chain 1: 1000 transitions using 10 leapfrog steps per transition would take 0.46 seconds.
Chain 1: Adjust your expectations accordingly!
Chain 1:
Chain 1:
Chain 1: WARNING: There aren't enough warmup iterations to fit the
Chain 1: three stages of adaptation as currently configured.
Chain 1: Reducing each adaptation stage to 15%/75%/10% of
Chain 1: the given number of warmup iterations:
Chain 1: init_buffer = 3
Chain 1: adapt_window = 20
Chain 1: term_buffer = 2
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Chain 1: 0.101 seconds (Total)
Chain 1:
SAMPLING FOR MODEL 'constant_multi_ind' NOW (CHAIN 1).
Chain 1:
Chain 1: Gradient evaluation took 4.3e-05 seconds
Chain 1: 1000 transitions using 10 leapfrog steps per transition would take 0.43 seconds.
Chain 1: Adjust your expectations accordingly!
Chain 1:
Chain 1:
Chain 1: WARNING: There aren't enough warmup iterations to fit the
Chain 1: three stages of adaptation as currently configured.
Chain 1: Reducing each adaptation stage to 15%/75%/10% of
Chain 1: the given number of warmup iterations:
Chain 1: init_buffer = 3
Chain 1: adapt_window = 20
Chain 1: term_buffer = 2
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Chain 1:
Chain 1: Elapsed Time: 0.241 seconds (Warm-up)
Chain 1: 0.054 seconds (Sampling)
Chain 1: 0.295 seconds (Total)
Chain 1:
[ FAIL 4 | WARN 0 | SKIP 0 | PASS 85 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-hmde_plot_de_pieces.R:17:3'): Execution and output: plot_de_pieces function ──
`plot` does not have names.
── Failure ('test-hmde_plot_de_pieces.R:21:3'): Execution and output: plot_de_pieces function ──
`plot` has type 'object', not 'list'.
── Failure ('test-hmde_plot_obs_est_inds.R:5:3'): Execution and output: plot_obs_est_inds function ──
`plot` does not have names.
── Failure ('test-hmde_plot_obs_est_inds.R:9:3'): Execution and output: plot_obs_est_inds function ──
`plot` has type 'object', not 'list'.
[ FAIL 4 | WARN 0 | SKIP 0 | PASS 85 ]
Error: Test failures
Execution halted
Flavor: r-release-linux-x86_64
Version: 1.2.1
Check: tests
Result: ERROR
Running 'testthat.R' [24s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
>
> library(testthat)
> library(hmde)
>
> test_check("hmde")
SAMPLING FOR MODEL 'constant_single_ind' NOW (CHAIN 1).
Chain 1:
Chain 1: Gradient evaluation took 4.6e-05 seconds
Chain 1: 1000 transitions using 10 leapfrog steps per transition would take 0.46 seconds.
Chain 1: Adjust your expectations accordingly!
Chain 1:
Chain 1:
Chain 1: WARNING: No variance estimation is
Chain 1: performed for num_warmup < 20
Chain 1:
Chain 1: Iteration: 1 / 20 [ 5%] (Warmup)
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Chain 1:
Chain 1: Elapsed Time: 0.001 seconds (Warm-up)
Chain 1: 0.001 seconds (Sampling)
Chain 1: 0.002 seconds (Total)
Chain 1:
SAMPLING FOR MODEL 'canham_multi_ind' NOW (CHAIN 1).
Chain 1:
Chain 1: Gradient evaluation took 0.002418 seconds
Chain 1: 1000 transitions using 10 leapfrog steps per transition would take 24.18 seconds.
Chain 1: Adjust your expectations accordingly!
Chain 1:
Chain 1:
Chain 1: WARNING: No variance estimation is
Chain 1: performed for num_warmup < 20
Chain 1:
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Chain 1:
Chain 1: Elapsed Time: 0.296 seconds (Warm-up)
Chain 1: 2.872 seconds (Sampling)
Chain 1: 3.168 seconds (Total)
Chain 1:
SAMPLING FOR MODEL 'canham_multi_ind' NOW (CHAIN 2).
Chain 2:
Chain 2: Gradient evaluation took 0.002762 seconds
Chain 2: 1000 transitions using 10 leapfrog steps per transition would take 27.62 seconds.
Chain 2: Adjust your expectations accordingly!
Chain 2:
Chain 2:
Chain 2: WARNING: No variance estimation is
Chain 2: performed for num_warmup < 20
Chain 2:
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Chain 2:
Chain 2: Elapsed Time: 4.088 seconds (Warm-up)
Chain 2: 0.11 seconds (Sampling)
Chain 2: 4.198 seconds (Total)
Chain 2:
SAMPLING FOR MODEL 'constant_single_ind' NOW (CHAIN 1).
Chain 1:
Chain 1: Gradient evaluation took 1.1e-05 seconds
Chain 1: 1000 transitions using 10 leapfrog steps per transition would take 0.11 seconds.
Chain 1: Adjust your expectations accordingly!
Chain 1:
Chain 1:
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Chain 1:
Chain 1: Elapsed Time: 0.217 seconds (Warm-up)
Chain 1: 0.905 seconds (Sampling)
Chain 1: 1.122 seconds (Total)
Chain 1:
SAMPLING FOR MODEL 'constant_multi_ind' NOW (CHAIN 1).
Chain 1:
Chain 1: Gradient evaluation took 6e-05 seconds
Chain 1: 1000 transitions using 10 leapfrog steps per transition would take 0.6 seconds.
Chain 1: Adjust your expectations accordingly!
Chain 1:
Chain 1:
Chain 1: WARNING: No variance estimation is
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Chain 1: 0.009 seconds (Total)
Chain 1:
SAMPLING FOR MODEL 'constant_multi_ind' NOW (CHAIN 2).
Chain 2:
Chain 2: Gradient evaluation took 1.2e-05 seconds
Chain 2: 1000 transitions using 10 leapfrog steps per transition would take 0.12 seconds.
Chain 2: Adjust your expectations accordingly!
Chain 2:
Chain 2:
Chain 2: WARNING: No variance estimation is
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Chain 2:
Chain 2: Elapsed Time: 0.004 seconds (Warm-up)
Chain 2: 0.017 seconds (Sampling)
Chain 2: 0.021 seconds (Total)
Chain 2:
SAMPLING FOR MODEL 'vb_single_ind' NOW (CHAIN 1).
Chain 1:
Chain 1: Gradient evaluation took 5.5e-05 seconds
Chain 1: 1000 transitions using 10 leapfrog steps per transition would take 0.55 seconds.
Chain 1: Adjust your expectations accordingly!
Chain 1:
Chain 1:
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Chain 1:
Chain 1: Elapsed Time: 0.882 seconds (Warm-up)
Chain 1: 1.841 seconds (Sampling)
Chain 1: 2.723 seconds (Total)
Chain 1:
SAMPLING FOR MODEL 'vb_multi_ind' NOW (CHAIN 1).
Chain 1:
Chain 1: Gradient evaluation took 9.6e-05 seconds
Chain 1: 1000 transitions using 10 leapfrog steps per transition would take 0.96 seconds.
Chain 1: Adjust your expectations accordingly!
Chain 1:
Chain 1:
Chain 1: WARNING: No variance estimation is
Chain 1: performed for num_warmup < 20
Chain 1:
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Chain 1:
Chain 1: Elapsed Time: 0.005 seconds (Warm-up)
Chain 1: 0.032 seconds (Sampling)
Chain 1: 0.037 seconds (Total)
Chain 1:
SAMPLING FOR MODEL 'vb_multi_ind' NOW (CHAIN 2).
Chain 2:
Chain 2: Gradient evaluation took 3.4e-05 seconds
Chain 2: 1000 transitions using 10 leapfrog steps per transition would take 0.34 seconds.
Chain 2: Adjust your expectations accordingly!
Chain 2:
Chain 2:
Chain 2: WARNING: No variance estimation is
Chain 2: performed for num_warmup < 20
Chain 2:
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Chain 2:
Chain 2: Elapsed Time: 0.034 seconds (Warm-up)
Chain 2: 0.086 seconds (Sampling)
Chain 2: 0.12 seconds (Total)
Chain 2:
SAMPLING FOR MODEL 'constant_multi_ind' NOW (CHAIN 1).
Chain 1:
Chain 1: Gradient evaluation took 5.1e-05 seconds
Chain 1: 1000 transitions using 10 leapfrog steps per transition would take 0.51 seconds.
Chain 1: Adjust your expectations accordingly!
Chain 1:
Chain 1:
Chain 1: WARNING: There aren't enough warmup iterations to fit the
Chain 1: three stages of adaptation as currently configured.
Chain 1: Reducing each adaptation stage to 15%/75%/10% of
Chain 1: the given number of warmup iterations:
Chain 1: init_buffer = 3
Chain 1: adapt_window = 20
Chain 1: term_buffer = 2
Chain 1:
Chain 1: Iteration: 1 / 50 [ 2%] (Warmup)
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Chain 1:
Chain 1: Elapsed Time: 0.068 seconds (Warm-up)
Chain 1: 0.063 seconds (Sampling)
Chain 1: 0.131 seconds (Total)
Chain 1:
SAMPLING FOR MODEL 'constant_multi_ind' NOW (CHAIN 1).
Chain 1:
Chain 1: Gradient evaluation took 5.3e-05 seconds
Chain 1: 1000 transitions using 10 leapfrog steps per transition would take 0.53 seconds.
Chain 1: Adjust your expectations accordingly!
Chain 1:
Chain 1:
Chain 1: WARNING: There aren't enough warmup iterations to fit the
Chain 1: three stages of adaptation as currently configured.
Chain 1: Reducing each adaptation stage to 15%/75%/10% of
Chain 1: the given number of warmup iterations:
Chain 1: init_buffer = 3
Chain 1: adapt_window = 20
Chain 1: term_buffer = 2
Chain 1:
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Chain 1:
Chain 1: Elapsed Time: 0.05 seconds (Warm-up)
Chain 1: 0.152 seconds (Sampling)
Chain 1: 0.202 seconds (Total)
Chain 1:
[ FAIL 4 | WARN 0 | SKIP 0 | PASS 85 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-hmde_plot_de_pieces.R:17:3'): Execution and output: plot_de_pieces function ──
`plot` does not have names.
── Failure ('test-hmde_plot_de_pieces.R:21:3'): Execution and output: plot_de_pieces function ──
`plot` has type 'object', not 'list'.
── Failure ('test-hmde_plot_obs_est_inds.R:5:3'): Execution and output: plot_obs_est_inds function ──
`plot` does not have names.
── Failure ('test-hmde_plot_obs_est_inds.R:9:3'): Execution and output: plot_obs_est_inds function ──
`plot` has type 'object', not 'list'.
[ FAIL 4 | WARN 0 | SKIP 0 | PASS 85 ]
Error: Test failures
Execution halted
Flavor: r-release-windows-x86_64
Version: 1.2.1
Check: installed package size
Result: NOTE
installed size is 113.0Mb
sub-directories of 1Mb or more:
article 3.0Mb
doc 1.1Mb
libs 108.3Mb
Flavors: r-oldrel-macos-arm64, r-oldrel-windows-x86_64
Version: 1.2.1
Check: for GNU extensions in Makefiles
Result: NOTE
GNU make is a SystemRequirements.
Flavors: r-oldrel-macos-arm64, r-oldrel-windows-x86_64
Version: 1.2.2
Check: installed package size
Result: NOTE
installed size is 114.8Mb
sub-directories of 1Mb or more:
article 3.0Mb
doc 1.1Mb
libs 110.1Mb
Flavor: r-oldrel-macos-x86_64
Version: 1.2.2
Check: for GNU extensions in Makefiles
Result: NOTE
GNU make is a SystemRequirements.
Flavor: r-oldrel-macos-x86_64
Version: 1.2.1
Check: tests
Result: ERROR
Running 'testthat.R' [40s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
>
> library(testthat)
> library(hmde)
>
> test_check("hmde")
SAMPLING FOR MODEL 'constant_single_ind' NOW (CHAIN 1).
Chain 1:
Chain 1: Gradient evaluation took 0.000114 seconds
Chain 1: 1000 transitions using 10 leapfrog steps per transition would take 1.14 seconds.
Chain 1: Adjust your expectations accordingly!
Chain 1:
Chain 1:
Chain 1: WARNING: No variance estimation is
Chain 1: performed for num_warmup < 20
Chain 1:
Chain 1: Iteration: 1 / 20 [ 5%] (Warmup)
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Chain 1: Iteration: 20 / 20 [100%] (Sampling)
Chain 1:
Chain 1: Elapsed Time: 0.001 seconds (Warm-up)
Chain 1: 0.001 seconds (Sampling)
Chain 1: 0.002 seconds (Total)
Chain 1:
SAMPLING FOR MODEL 'canham_multi_ind' NOW (CHAIN 1).
Chain 1:
Chain 1: Gradient evaluation took 0.004147 seconds
Chain 1: 1000 transitions using 10 leapfrog steps per transition would take 41.47 seconds.
Chain 1: Adjust your expectations accordingly!
Chain 1:
Chain 1:
Chain 1: WARNING: No variance estimation is
Chain 1: performed for num_warmup < 20
Chain 1:
Chain 1: Iteration: 1 / 20 [ 5%] (Warmup)
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Chain 1:
Chain 1: Elapsed Time: 6.424 seconds (Warm-up)
Chain 1: 11.843 seconds (Sampling)
Chain 1: 18.267 seconds (Total)
Chain 1:
SAMPLING FOR MODEL 'canham_multi_ind' NOW (CHAIN 2).
Chain 2:
Chain 2: Gradient evaluation took 0.004314 seconds
Chain 2: 1000 transitions using 10 leapfrog steps per transition would take 43.14 seconds.
Chain 2: Adjust your expectations accordingly!
Chain 2:
Chain 2:
Chain 2: WARNING: No variance estimation is
Chain 2: performed for num_warmup < 20
Chain 2:
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Chain 2:
Chain 2: Elapsed Time: 0.349 seconds (Warm-up)
Chain 2: 0.547 seconds (Sampling)
Chain 2: 0.896 seconds (Total)
Chain 2:
SAMPLING FOR MODEL 'constant_single_ind' NOW (CHAIN 1).
Chain 1:
Chain 1: Gradient evaluation took 1.2e-05 seconds
Chain 1: 1000 transitions using 10 leapfrog steps per transition would take 0.12 seconds.
Chain 1: Adjust your expectations accordingly!
Chain 1:
Chain 1:
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Chain 1:
Chain 1: Elapsed Time: 0.549 seconds (Warm-up)
Chain 1: 1.285 seconds (Sampling)
Chain 1: 1.834 seconds (Total)
Chain 1:
SAMPLING FOR MODEL 'constant_multi_ind' NOW (CHAIN 1).
Chain 1:
Chain 1: Gradient evaluation took 3.3e-05 seconds
Chain 1: 1000 transitions using 10 leapfrog steps per transition would take 0.33 seconds.
Chain 1: Adjust your expectations accordingly!
Chain 1:
Chain 1:
Chain 1: WARNING: No variance estimation is
Chain 1: performed for num_warmup < 20
Chain 1:
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Chain 1:
Chain 1: Elapsed Time: 0.006 seconds (Warm-up)
Chain 1: 0.016 seconds (Sampling)
Chain 1: 0.022 seconds (Total)
Chain 1:
SAMPLING FOR MODEL 'constant_multi_ind' NOW (CHAIN 2).
Chain 2:
Chain 2: Gradient evaluation took 2.1e-05 seconds
Chain 2: 1000 transitions using 10 leapfrog steps per transition would take 0.21 seconds.
Chain 2: Adjust your expectations accordingly!
Chain 2:
Chain 2:
Chain 2: WARNING: No variance estimation is
Chain 2: performed for num_warmup < 20
Chain 2:
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Chain 2:
Chain 2: Elapsed Time: 0.01 seconds (Warm-up)
Chain 2: 0.017 seconds (Sampling)
Chain 2: 0.027 seconds (Total)
Chain 2:
SAMPLING FOR MODEL 'vb_single_ind' NOW (CHAIN 1).
Chain 1:
Chain 1: Gradient evaluation took 0.000264 seconds
Chain 1: 1000 transitions using 10 leapfrog steps per transition would take 2.64 seconds.
Chain 1: Adjust your expectations accordingly!
Chain 1:
Chain 1:
Chain 1: Iteration: 1 / 1000 [ 0%] (Warmup)
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Chain 1:
Chain 1: Elapsed Time: 0.789 seconds (Warm-up)
Chain 1: 1.837 seconds (Sampling)
Chain 1: 2.626 seconds (Total)
Chain 1:
SAMPLING FOR MODEL 'vb_multi_ind' NOW (CHAIN 1).
Chain 1:
Chain 1: Gradient evaluation took 6.3e-05 seconds
Chain 1: 1000 transitions using 10 leapfrog steps per transition would take 0.63 seconds.
Chain 1: Adjust your expectations accordingly!
Chain 1:
Chain 1:
Chain 1: WARNING: No variance estimation is
Chain 1: performed for num_warmup < 20
Chain 1:
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Chain 1:
Chain 1: Elapsed Time: 0.028 seconds (Warm-up)
Chain 1: 0.026 seconds (Sampling)
Chain 1: 0.054 seconds (Total)
Chain 1:
SAMPLING FOR MODEL 'vb_multi_ind' NOW (CHAIN 2).
Chain 2:
Chain 2: Gradient evaluation took 3.2e-05 seconds
Chain 2: 1000 transitions using 10 leapfrog steps per transition would take 0.32 seconds.
Chain 2: Adjust your expectations accordingly!
Chain 2:
Chain 2:
Chain 2: WARNING: No variance estimation is
Chain 2: performed for num_warmup < 20
Chain 2:
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Chain 2:
Chain 2: Elapsed Time: 0.012 seconds (Warm-up)
Chain 2: 0.005 seconds (Sampling)
Chain 2: 0.017 seconds (Total)
Chain 2:
SAMPLING FOR MODEL 'constant_multi_ind' NOW (CHAIN 1).
Chain 1:
Chain 1: Gradient evaluation took 4.9e-05 seconds
Chain 1: 1000 transitions using 10 leapfrog steps per transition would take 0.49 seconds.
Chain 1: Adjust your expectations accordingly!
Chain 1:
Chain 1:
Chain 1: WARNING: There aren't enough warmup iterations to fit the
Chain 1: three stages of adaptation as currently configured.
Chain 1: Reducing each adaptation stage to 15%/75%/10% of
Chain 1: the given number of warmup iterations:
Chain 1: init_buffer = 3
Chain 1: adapt_window = 20
Chain 1: term_buffer = 2
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Chain 1:
Chain 1: Elapsed Time: 0.066 seconds (Warm-up)
Chain 1: 0.098 seconds (Sampling)
Chain 1: 0.164 seconds (Total)
Chain 1:
SAMPLING FOR MODEL 'constant_multi_ind' NOW (CHAIN 1).
Chain 1:
Chain 1: Gradient evaluation took 8.8e-05 seconds
Chain 1: 1000 transitions using 10 leapfrog steps per transition would take 0.88 seconds.
Chain 1: Adjust your expectations accordingly!
Chain 1:
Chain 1:
Chain 1: WARNING: There aren't enough warmup iterations to fit the
Chain 1: three stages of adaptation as currently configured.
Chain 1: Reducing each adaptation stage to 15%/75%/10% of
Chain 1: the given number of warmup iterations:
Chain 1: init_buffer = 3
Chain 1: adapt_window = 20
Chain 1: term_buffer = 2
Chain 1:
Chain 1: Iteration: 1 / 50 [ 2%] (Warmup)
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Chain 1:
Chain 1: Elapsed Time: 0.255 seconds (Warm-up)
Chain 1: 0.184 seconds (Sampling)
Chain 1: 0.439 seconds (Total)
Chain 1:
[ FAIL 4 | WARN 0 | SKIP 0 | PASS 85 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-hmde_plot_de_pieces.R:17:3'): Execution and output: plot_de_pieces function ──
`plot` does not have names.
── Failure ('test-hmde_plot_de_pieces.R:21:3'): Execution and output: plot_de_pieces function ──
`plot` has type 'object', not 'list'.
── Failure ('test-hmde_plot_obs_est_inds.R:5:3'): Execution and output: plot_obs_est_inds function ──
`plot` does not have names.
── Failure ('test-hmde_plot_obs_est_inds.R:9:3'): Execution and output: plot_obs_est_inds function ──
`plot` has type 'object', not 'list'.
[ FAIL 4 | WARN 0 | SKIP 0 | PASS 85 ]
Error: Test failures
Execution halted
Flavor: r-oldrel-windows-x86_64