Package: serofoi
Title: Bayesian Estimation of the Force of Infection from Serological
        Data
Type: Package
Version: 1.0.3
Authors@R: c(
    person("Zulma M.", "Cucunubá", , "zulma.cucunuba@javeriana.edu.co", role = c("aut", "cre"),
           comment = c(ORCID = "0000-0002-8165-3198")),
    person("Nicolás", "T. Domínguez", , "ex-ntorres@javeriana.edu.co", role = "aut",
           comment = c(ORCID = "0009-0002-8484-1298")),
    person("Ben", "Lambert", role = "aut"),
    person("Pierre", "Nouvellet", role = "aut"),
    person("Geraldine", "Gómez", role = "ctb",
           comment = c(ORCID = "0009-0007-8701-0568")),
    person("Jaime A.", "Pavlich-Mariscal", role = "ctb",
           comment = c(ORCID = "0000-0002-3892-6680")),
    person("Hugo", "Gruson", role = "ctb",
           comment = c(ORCID = "0000-0002-4094-1476")),
    person("David Santiago", "Quevedo", role = "ctb",
           comment = c(ORCID = "0000-0003-1583-4262")),
    person("Miguel", "Gámez", role = "ctb"),
    person("Sumali", "Bajaj", role = "ctb"),
    person("Everlyn", "Kamau", role = "ctb"),
    person("Richard", "Creswell", role = "ctb"),
    person("International Development Research Center (IDRC)", role = "fnd"),
    person("Pontificia Universidad Javeriana", role = "cph")
  )
Description: Estimating the force of infection from time varying, age varying, or constant
    serocatalytic models from population based seroprevalence studies using a Bayesian framework,
    including data simulation functions enabling the generation of serological surveys based on this
    models. This tool also provides a flexible prior specification syntax for the force of infection
    and the seroreversion rate, as well as methods to assess model convergence and comparison
    criteria along with useful visualisation functions.
License: MIT + file LICENSE
URL: https://github.com/epiverse-trace/serofoi,
        https://epiverse-trace.github.io/serofoi/
BugReports: https://github.com/epiverse-trace/serofoi/issues
Depends: R (>= 4.1.0)
Imports: bayesplot, checkmate, config, cowplot, dplyr, ggplot2, glue,
        graphics, loo, expm, methods, purrr, Rcpp (>= 0.12.0), rstan
        (>= 2.18.1), rstantools (>= 2.3.1), stats, tibble, tidyr
Suggests: knitr, rlang, rmarkdown, scales, spelling, testthat (>=
        3.0.0)
LinkingTo: BH (>= 1.66.0), Rcpp (>= 0.12.0), RcppEigen (>= 0.3.3.3.0),
        RcppParallel (>= 5.0.1), rstan (>= 2.18.1), StanHeaders (>=
        2.18.0)
VignetteBuilder: knitr
Biarch: true
Config/Needs/website: epiverse-trace/epiversetheme
Config/testthat/edition: 3
Encoding: UTF-8
Language: en-GB
LazyData: true
NeedsCompilation: yes
RoxygenNote: 7.3.2
SystemRequirements: GNU make
Packaged: 2025-03-27 14:51:29 UTC; torresn
Author: Zulma M. Cucunubá [aut, cre] (<https://orcid.org/0000-0002-8165-3198>),
  Nicolás T. Domínguez [aut] (<https://orcid.org/0009-0002-8484-1298>),
  Ben Lambert [aut],
  Pierre Nouvellet [aut],
  Geraldine Gómez [ctb] (<https://orcid.org/0009-0007-8701-0568>),
  Jaime A. Pavlich-Mariscal [ctb]
    (<https://orcid.org/0000-0002-3892-6680>),
  Hugo Gruson [ctb] (<https://orcid.org/0000-0002-4094-1476>),
  David Santiago Quevedo [ctb] (<https://orcid.org/0000-0003-1583-4262>),
  Miguel Gámez [ctb],
  Sumali Bajaj [ctb],
  Everlyn Kamau [ctb],
  Richard Creswell [ctb],
  International Development Research Center (IDRC) [fnd],
  Pontificia Universidad Javeriana [cph]
Maintainer: Zulma M. Cucunubá <zulma.cucunuba@javeriana.edu.co>
Repository: CRAN
Date/Publication: 2025-03-31 10:00:02 UTC
Built: R 4.7.0; x86_64-w64-mingw32; 2026-07-29 04:22:26 UTC; windows
Archs: x64
